PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481774.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 1107aa    MW: 122501 Da    PI: 6.4151
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481774.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.66.1e-20133233198
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++ yr++++r++lt+GW+  v+ ++L +gD+v+F +d++++
  XP_016481774.1 133 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNVWTFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDSVLFIRDEKHQ 226
                     99*****************************9777766.49************************************************665555 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     f   +++++
  XP_016481774.1 227 F--QLGIRK 233
                     5..888776 PP
2Auxin_resp119.52.7e-39259342183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPra++seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+Wr+L+
  XP_016481774.1 259 AAHAAANNSPFTVFYNPRAGPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDMDPVRWKNSQWRNLQ 342
                     79*******************************99879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.62E-41123262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-38127248IPR015300DNA-binding pseudobarrel domain
CDDcd100175.67E-18132233No hitNo description
PfamPF023621.3E-17133234IPR003340B3 DNA binding domain
SMARTSM010194.5E-21133235IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194133235IPR003340B3 DNA binding domain
PfamPF065071.6E-34259342IPR010525Auxin response factor
PROSITE profilePS5174527.129951079IPR000270PB1 domain
PfamPF023093.3E-69971080IPR033389AUX/IAA domain
SuperFamilySSF542775.2E-610121073No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1107 aa     Download sequence    Send to blast
MKTPVNGAGA GTQQASGNEA DEKKRINPEL WQACAGPLVN LPVAGTHVVY FPQGHSEQVA  60
ASIKKDVEAQ VPNYPNLPSK LICLLHNVTL HADPETDEVY AQMTLQPVPS FDKEALLRSD  120
LSMKVNKPQP EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDYSLQPPA QELVARDLHD  180
NVWTFRHVYR GQPKRHLLTT GWSLVVSGKR LFAGDSVLFI RDEKHQFQLG IRKANRQPTN  240
LSSSVLSSDS MHIGILAAAA HAAANNSPFT VFYNPRAGPS EFVIPLAKYY KATYSSQVSL  300
GMRFRMMFET EESGTRRYMG TITGISDMDP VRWKNSQWRN LQVGWDESTA GERINRVSIW  360
EIEPITAPFL ICSSPFFSSK HPRQPGMPDG DCSDMDGVFR RTMPWLGDDF GMTDPQGLPG  420
LSLVQWMNMQ KNPSLTNPMM SNYLNSLSGS VLQNLAGADL SRQLGLAAPQ LQQQHNLQFN  480
TQRPNQQGQQ LEQLQKLPAA TLNSLDSIMQ SQQQLYDISQ QPRQNSTNQS LPTSQVQAQL  540
LQAQSLVQSQ NVLPSQQSIQ NQLQRNLPQS LPQQQPQQQI LGQSQQQNFM SSQPPDPVNQ  600
HHFSENQAQF QLLQKLHQQQ KSLLAQQSAL QQSSHLGSIQ DQQKQFLDAS QNFSRSLATS  660
QMLDASQTTS TSTSLSHSQV VQQQMTRTNS QSNLRFVQPT QQPKLQQQQQ QYGILPDLSG  720
PVGYSLPRTT YQLATNGSSL TRTAGGGQPV MDEVPSWSTS VSTNNCQNVV QQNLNGRIHE  780
STGVRDETTH YSGPLLNSSG LEVMSANSNL VKELQQKNDV KPSINVSKNQ NHGFLAPQTL  840
NTAGHTLDYL DSSSSATSAC LSQNDVQLQQ ATDPPLSSSS HPLIFRDSPD GEVQGDSRND  900
IGFGANMENQ LGLPMMPDPL ITKSLMGSRK DFSDNLSSGG GMLSSYENPK EAQPELLASM  960
ASEYMTFNSI DSTINDGNFM DRGAWDPPPQ LPRMRTYTKV YKRGAVGRSI DIGRYSGYEE  1020
LKLDLARRFG IEGQLEDRQR VGWKLVYVDH ENDVLLVGDD PWEEFVGCVR CIKILSPQEV  1080
QQMSLDGDFG GNVLQHQACS SSDAGGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1652236347388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5651300.0HM565130.1 Solanum lycopersicum auxin response factor 19-1 (ARF19-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016481774.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A1S4AYY00.0A0A1S4AYY0_TOBAC; Auxin response factor
STRINGXP_009768741.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19