PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016481890.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 253aa MW: 28694.8 Da PI: 9.0418

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016481890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.4	3e-14	77	129	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h +Er+RR+++ + ++ Lr+llP + ++K s ++ +Av+YIk+Lq XP_016481890.1 77 KKVMHRDMERQRRQEMTNLYSSLRSLLPLqC---VKGKRSVSDHMHEAVNYIKQLQ 129 6899***********************88...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.85E-9	75	130	No hit	No description
PROSITE profile	PS50888	13.516	76	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-11	77	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-13	77	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-11	78	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0032	82	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MFPLQQSDDN ELVFQILSNP SQQGNISQDL ILDYASLETS HPQNVKNPKK KKLPRRVLGS 60 RSNSDKKDSI TDEFKLKKVM HRDMERQRRQ EMTNLYSSLR SLLPLQCVKG KRSVSDHMHE 120 AVNYIKQLQA NMNKLERKRE KLKMVPKSSP RGRVEEDSSD VSSIIASPDC DTVSPCHGGV 180 EILINGNNNR GESLPLSRIL QELLKEGLDV VSCVSAKVNQ NSLHRIQSEG CDEKCINLHS 240 LQRKVIDVIN IDV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016481890.1	0.0	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A1S4AYZ3	0.0	A0A1S4AYZ3_TOBAC; transcription factor bHLH118-like
STRING	XP_009587651.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	4e-36	bHLH family protein