PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481909.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 426aa    MW: 47486.5 Da    PI: 4.9919
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.51e-33175267397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     ++rlws+eD++++L+G+ dfka++g++p + d++af++f+k++++++vsksq+++K+rrLKkKf ++vk     ++p+fsk+hd  +fe+skkiW
  XP_016481909.1 175 PSRLWSDEDQLAILKGMADFKAQKGSEPNAtDMSAFHDFIKGKLQVEVSKSQVTDKLRRLKKKFLTNVKI---SDDPVFSKPHDYLMFEFSKKIW 266
                     68************************99988**************************************9...99******************** PP

          DUF573  97 g 97 
                     g
  XP_016481909.1 267 G 267
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.8E-29176267IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAPKSKSRLV DQPPSASSSE EQDPQQAEES QEEEEEAAQS EEEEEEESGE DESDDEEEPK  60
TAPPLEKKPT SQKPLQTPQN KPQSSSSESG TEDGSGSDSD SESGQSQPSP SASDFTVKPS  120
VPTAKSPSKP FSKRPQETQQ QQALKEKHSR PNKKPKISEE DSKVSEEKKS AATTPSRLWS  180
DEDQLAILKG MADFKAQKGS EPNATDMSAF HDFIKGKLQV EVSKSQVTDK LRRLKKKFLT  240
NVKISDDPVF SKPHDYLMFE FSKKIWGDAG TSNTNGINEI VNNGTNGKAK KTVDVVKRST  300
AEPKKSAKVS TLTKLKDDEK PKEDEKRPSV KEVDKEDVVV KVDDRQDFRS KYPNLAASFS  360
LPAMSSIFPN GVDIFKENMS LIASDKAKVL EEKWKKLHDD EDDLMLKRLD LIREHYKLVV  420
DARRGN
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2535919e-38AC253591.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone hba-13d24 map 7, complete sequence.
GenBankAC2536119e-38AC253611.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-111k20 map 7, complete sequence.
GenBankHG9755199e-38HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777843.10.0PREDICTED: mediator-associated protein 1-like
RefseqXP_016481909.10.0PREDICTED: mediator-associated protein 1-like
SwissprotQ94IK21e-134STK_SOLTU; STOREKEEPER protein
TrEMBLA0A1S4AZB40.0A0A1S4AZB4_TOBAC; mediator-associated protein 1-like
TrEMBLA0A1U7WGR30.0A0A1U7WGR3_NICSY; mediator-associated protein 1-like
STRINGXP_009777843.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.19e-23DNA-binding storekeeper protein-related transcriptional regulator