PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482001.1
Common NameERF3, ERF5, ERF-5
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 225aa    MW: 24714.2 Da    PI: 7.9223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.4e-202876355
             AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  XP_016482001.1 28 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARALRG 76
                    8*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-352790IPR001471AP2/ERF domain
CDDcd000186.05E-182784No hitNo description
PROSITE profilePS5103223.2752784IPR001471AP2/ERF domain
PfamPF008479.1E-132776IPR001471AP2/ERF domain
PRINTSPR003672.8E-102839IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-222885IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-322884IPR001471AP2/ERF domain
PRINTSPR003672.8E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRRGRAAAAP APVTGEPNGS GGSKEIRFRG VRKRPWGRFA AEIRDPWKKT RVWLGTFDSA  60
EDAARAYDAA ARALRGPKAK TNFPLPYAHH HQFNQGHNPN NDPFVDSRFY PQDNPIISQR  120
PTSSSMSSTV ESFSGPRPPP APRQQTTASS RKYTRSPPVV PDDCHSDCDS SSSVVDHGDC  180
EKENDNDNDN IASSSFRKPL LFDLNLPPPM DDAGADDLHC TALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-212296978Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0245750.0AB024575.1 Nicotiana tabacum mRNA for ethylene responsive element binding factor, complete cds.
GenBankAB6690850.0AB669085.1 Nicotiana tabacum NtERF#227 mRNA for ethylene response factor #227, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312653.11e-166ethylene-responsive transcription factor 3
RefseqXP_009780689.11e-166PREDICTED: ethylene-responsive transcription factor 3
SwissprotQ9SXS81e-167ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A1U7X1D51e-164A0A1U7X1D5_NICSY; ethylene-responsive transcription factor 3
TrEMBLR4WAI71e-164R4WAI7_TOBAC; Ethylene response factor #227
STRINGXP_009780689.11e-165(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-25ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Ashida Y,Yokobatake N,Kohchi C,Shimoda K,Hirata T
    Cloning of cDNA encoding ethylene-responsive element binding protein-5 in the cultured cells of Nicotiana tabacum.
    DNA Seq., 2000. 11(1-2): p. 125-9
    [PMID:10902919]