PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482057.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23604.2 Da    PI: 10.0624
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.16.6e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i++k  rqvtfskRr+g+lKKA+ LS+LCd++vav++fs++ +ly++ss
  XP_016482057.1  9 KPIKDKNSRQVTFSKRRKGLLKKAKHLSILCDVDVAVVVFSNRRRLYDFSS 59
                    68***********************************************96 PP
2K-box51.73.9e-18881691798
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + ++a      e Lq+  R+l   d++ Ls+ +L +Le+qL+++l + Rs+K++l++e i+ lq+kek l+eenk L+ ++
  XP_016482057.1  88 EHSKYASFMTVGELLQTVERQLEEPDVDGLSVTDLVHLENQLQSALMQARSQKTHLMVEYIKSLQEKEKLLKEENKLLEDRI 169
                     45567777888899***************************************************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.188161IPR002100Transcription factor, MADS-box
CDDcd002653.30E-32273No hitNo description
SuperFamilySSF554557.85E-28279IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-23323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.53185175IPR002487Transcription factor, K-box
PfamPF014861.0E-1494169IPR002487Transcription factor, K-box
Gene3DG3DSA:4.10.280.105.5E-4145171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRKKVEIKP IKDKNSRQVT FSKRRKGLLK KAKHLSILCD VDVAVVVFSN RRRLYDFSST  60
NSLVEIVRRY HNHVEAEKEI SADVSDTEHS KYASFMTVGE LLQTVERQLE EPDVDGLSVT  120
DLVHLENQLQ SALMQARSQK THLMVEYIKS LQEKEKLLKE ENKLLEDRIA VIKKNREVNG  180
MASNFTNLAP VPMIRGQQRA TLNFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-17187187Myocyte-specific enhancer factor 2B
1tqe_Q2e-17187187Myocyte-specific enhancer factor 2B
1tqe_R2e-17187187Myocyte-specific enhancer factor 2B
1tqe_S2e-17187187Myocyte-specific enhancer factor 2B
6c9l_A2e-17187187Myocyte-specific enhancer factor 2B
6c9l_B2e-17187187Myocyte-specific enhancer factor 2B
6c9l_C2e-17187187Myocyte-specific enhancer factor 2B
6c9l_D2e-17187187Myocyte-specific enhancer factor 2B
6c9l_E2e-17187187Myocyte-specific enhancer factor 2B
6c9l_F2e-17187187Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482057.11e-149PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A1S4AZG21e-148A0A1S4AZG2_TOBAC; agamous-like MADS-box protein AGL27
STRINGXP_009625850.11e-138(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.12e-37MIKC_MADS family protein