PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482518.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 459aa    MW: 51073.3 Da    PI: 6.614
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-17147196155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_016482518.1 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 196
                     78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16147205IPR016177DNA-binding domain
CDDcd000187.08E-12147206No hitNo description
PfamPF008472.1E-9147196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-17148204IPR001471AP2/ERF domain
SMARTSM003801.3E-30148210IPR001471AP2/ERF domain
PROSITE profilePS5103217.82148204IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-6239284IPR016177DNA-binding domain
CDDcd000182.51E-11239284No hitNo description
SMARTSM003802.7E-11240288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MFDLNLGFEE FAMDDDTVHL SYETTTSEKL QELQMENSGT SNSSIVNIET SSTAGDDEFF  60
SCSDDRRRND GYAFDILKGN DYEESEFVTK ELFPLTGGEA ATELLSRQQW LDLSANYGGP  120
AEQRIVVIPQ QRQQVKKSRR GPRSKSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA  180
HAAARAYDRA AIKFRGLDAD INFNVADYHD DLKQMSNFTK EEFVHILRRQ STGFSRGSSK  240
YRGVTLHKCG RWEARMGQFL GKKAYDKAVI KCSGREAVTN FELSTYEGEL SAEDNGGASH  300
NLDLNLGIAS SSQADEQHGN TCQMGNTEFL LASNGLTEYR GAMRSPSTTM GSKLPHGRQP  360
LTDRPLLWNG VNTSVFPTFK GTAIGKGMEV DSSPNWTRQD QHPYGGSPSM PLFSTAASSG  420
FANSTSAAAH QHHFSTGPLP YHHSPSLANM NFAHYYCRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482518.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK033e-97RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S4B1530.0A0A1S4B153_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_009606014.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.12e-94related to AP2.7