PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016482747.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 476aa MW: 52950.2 Da PI: 5.6451

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016482747.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.5	9.1e-13	150	172	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C ++++tGtCkyG +CkF+H+ XP_016482747.1 150 ADCAYYMKTGTCKYGLNCKFNHP 172 68********************8 PP
2	zf-CCCH	27.1	7.3e-09	198	220	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++ G CkyG+ Ck+ H++ XP_016482747.1 198 ECKYYLTEGGCKYGNACKYYHSR 220 7********************95 PP
3	zf-CCCH	40.8	3.5e-13	241	265	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++rtG CkyG++C+F+H+ XP_016482747.1 241 GEKDCPYYMRTGSCKYGSNCRFHHP 265 7889********************9 PP
4	zf-CCCH	37.3	4.5e-12	416	441	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f++r+G+Ck+G+ CkF H++ XP_016482747.1 416 DQAVCSFYSRYGICKFGPACKFDHPE 441 6789********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.6E-5	146	173	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-6	146	176	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.192	146	174	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-10	150	172	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-5	152	172	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0035	193	220	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.882	193	221	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-6	198	220	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	198	221	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.9E-5	199	220	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-7	239	266	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.718	239	267	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-10	241	265	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.63E-7	241	267	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-6	245	264	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	10	374	395	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.803	374	391	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	412	439	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-6	414	441	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.14	414	442	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-9	416	441	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MEAIESQQHI QNLNDSTLEK QGLGLDPQPS FSPDPNVQNP PQNLPDAVES DDDDEIALQF 60 ICEELQGLVL NQAYIEERSQ GENHEENGRE KSENECGDNY YGGGDYTWSE NGNENENDVE 120 NENSDVAGSK QWGFNGNRRG LNHPLRPDAA DCAYYMKTGT CKYGLNCKFN HPSQRRNQWA 180 MEKGKQKDDS EERAGQIECK YYLTEGGCKY GNACKYYHSR RKGAISPVLN INFLGLPIRP 240 GEKDCPYYMR TGSCKYGSNC RFHHPDPSTV AGGDPSSGYN GGSAPVKSAP YPTGSSWSSP 300 RALNGTASFV PVVYPASQGI PLSPQWNGYL APVYPTSGKS LPTPPAFTMK DPAIKTNFYT 360 RAQQPWLVEE YPERPSQPDC SYFIKTGDCK FHHPKNQTSK TNMSVLNDKG LPLRPDQAVC 420 SFYSRYGICK FGPACKFDHP EHYDNSASSI GSVFDQRNSA TSYGSRWRGK ETEVAL

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MEAIESQQHI QNLNDSTLEK QGLGLDPQPS FSPDPNVQNP PQNLPDAVES DDDDEIALQF  60
ICEELQGLVL NQAYIEERSQ GENHEENGRE KSENECGDNY YGGGDYTWSE NGNENENDVE  120
NENSDVAGSK QWGFNGNRRG LNHPLRPDAA DCAYYMKTGT CKYGLNCKFN HPSQRRNQWA  180
MEKGKQKDDS EERAGQIECK YYLTEGGCKY GNACKYYHSR RKGAISPVLN INFLGLPIRP  240
GEKDCPYYMR TGSCKYGSNC RFHHPDPSTV AGGDPSSGYN GGSAPVKSAP YPTGSSWSSP  300
RALNGTASFV PVVYPASQGI PLSPQWNGYL APVYPTSGKS LPTPPAFTMK DPAIKTNFYT  360
RAQQPWLVEE YPERPSQPDC SYFIKTGDCK FHHPKNQTSK TNMSVLNDKG LPLRPDQAVC  420
SFYSRYGICK FGPACKFDHP EHYDNSASSI GSVFDQRNSA TSYGSRWRGK ETEVAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016482747.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X3
Swissprot	Q9STM4	1e-104	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A1S4B1E3	0.0	A0A1S4B1E3_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X3
STRING	XP_009600648.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-106	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]