PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016482956.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 253aa MW: 29695.4 Da PI: 8.2943

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016482956.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.6	1.6e-14	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+ +v+++G ++W+ a+ g++Rt+k+c++rw +yl XP_016482956.1 8 KGPWSEQEDLQLAFYVNLFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 55 79********************************************97 PP
2	Myb_DNA-binding	49.6	8.9e-16	61	106	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l+++++ ++G++ W++Ia +++ gRt++++k++w++++ XP_016482956.1 61 RGKMTPQEERLILELHSKWGNR-WSRIAWKLP-GRTDNEIKNYWRTHM 106 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.869	3	55	IPR017930	Myb domain
SuperFamily	SSF46689	1.58E-27	7	102	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-12	7	57	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-13	8	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-20	9	62	IPR009057	Homeodomain-like
CDD	cd00167	1.27E-7	10	55	No hit	No description
PROSITE profile	PS51294	26.102	56	110	IPR017930	Myb domain
SMART	SM00717	9.9E-15	60	108	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-14	61	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-23	63	109	IPR009057	Homeodomain-like
CDD	cd00167	1.06E-9	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MAQEEARKGP WSEQEDLQLA FYVNLFGDRR WDFLAKVSGL KRTGKSCRLR WVNYLHPGLK 60 RGKMTPQEER LILELHSKWG NRWSRIAWKL PGRTDNEIKN YWRTHMRKKA QDDRKNKASI 120 SPSSSFSNCS SYFSSNSPDV DFMPITENNE RNFYDTGGLL GVHEQSSLQN AGKKKVGDQE 180 KGKSMKVYSM DEIWKDIELL SEENEKKNKP ILPISTMWEY CPDSTLWMTD EEETKMFPQF 240 YCLDNQDNSF FTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	7e-26	5	110	1	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	7e-26	5	110	24	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597408.1	0.0	PREDICTED: transcription factor MYB48-like
Refseq	XP_016482956.1	0.0	PREDICTED: transcription factor MYB48-like
Swissprot	Q53NK6	6e-71	MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBL	A0A1S4B2A3	0.0	A0A1S4B2A3_TOBAC; transcription factor MYB48-like
STRING	XP_009597408.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46130.1	3e-70	myb domain protein 48

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]