PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016483015.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 159aa MW: 17500.6 Da PI: 7.0757

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016483015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.7e-10	43	90	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_016483015.1 43 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 90 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.66E-10	37	94	No hit	No description
SuperFamily	SSF47459	8.64E-18	37	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-18	39	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	39	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-7	43	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-10	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
ENHESGGDGE GNSGKSADQP AKSAEPPKDY IHVRARRGQA TDSHSLAERA RREKISERMK 60 ILQDLVPGCN KVIGKALVLD EIINYVQSLQ RQVEFLSMKL EAVNTRVPPH IEGFPTKDLG 120 QQAFEANAMA FGSQGTREYA GGTSPDWLHM QIGGGFERR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	4e-44	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	4e-44	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593799.1	1e-115	PREDICTED: transcription factor bHLH79
Refseq	XP_016483015.1	1e-116	PREDICTED: transcription factor bHLH79-like, partial
Swissprot	Q69WS3	2e-72	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	A0A1S4B251	1e-115	A0A1S4B251_TOBAC; transcription factor bHLH79-like
STRING	XP_009593799.1	1e-115	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	3e-81	BIG PETAL P