PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016483030.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 189aa MW: 20759.8 Da PI: 5.2358

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016483030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.2	1.2e-42	33	131	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++l+e++r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+aela XP_016483030.1 33 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELREDQRADAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQAELA 127 7********************************************************************************************** PP DUF260 96 llke 99 +++ XP_016483030.1 128 KAQV 131 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.02	32	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-43	33	130	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MECSDKITAT SSSSSAGMMT PPPSPPSPVI LTPCAACKIL RRRCVDKCVL APYFPPTEPL 60 KFTIAHRVFG ASNIIKMLQE LREDQRADAV NSMVYEANAR IRDPVYGCAG AICQLQKQIS 120 ELQAELAKAQ VEMLNVQSQN ANLVSLICRE MSQNQGNNGS VCPDQQTYGN TNLFLDDNSV 180 YAAWEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-43	24	135	2	113	LOB family transfactor Ramosa2.1
5ly0_B	4e-43	24	135	2	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780362.1	1e-140	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_016483030.1	1e-140	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-71	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S4B266	1e-138	A0A1S4B266_TOBAC; LOB domain-containing protein 1-like
TrEMBL	A0A1U7WK69	1e-138	A0A1U7WK69_NICSY; LOB domain-containing protein 1-like
STRING	XP_009780362.1	1e-139	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-73	LOB domain-containing protein 1