PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483421.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 405aa    MW: 47039 Da    PI: 7.3407
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.12.4e-5571361129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv++yL+kk+++++++l  vi++vd+yk+ePwdL++  ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  XP_016483421.1   7 VPPGFRFHPTDEELVDYYLRKKITSRRIDL-GVINDVDLYKIEPWDLQElcRIGTeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 100
                     69****************************.99**************954555442556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  XP_016483421.1 101 YS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                     **.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-565141IPR003441NAC domain
PROSITE profilePS5100555.5527215IPR003441NAC domain
PfamPF023651.2E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKIT SRRIDLGVIN DVDLYKIEPW DLQELCRIGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDPN GAPQASYSTF YSFKPYALHV FLVDHMQSPP KKIKPITSLN  180
KLLSQMIVWT CAILFPFHFI QPQEEGWVVC RVFKKRIATM RKESEHESPI WYDHDQVSFM  240
DSPKQQHSQS GLTYHYPNYP CKKELDTLHY QIPPPPHHHH QQQFLQLPLL ESPKFLPPPP  300
CSSMPVFAIN VNNHVHQYGN NNNISTNTNE LAGDDQVMDW RVLDKFVASQ LSQEEVSKEN  360
DYSNTLQGAA DDSNLNMVRN LNKQLEAATE NTSTASSSSQ IDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-46613514140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755152e-81HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483421.10.0PREDICTED: NAC domain-containing protein 105-like
TrEMBLA0A1S4B3K10.0A0A1S4B3K1_TOBAC; NAC domain-containing protein 105-like
STRINGPOPTR_0012s14660.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-82NAC 007