PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483682.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 247aa    MW: 27678.2 Da    PI: 4.3254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.3e-1484170196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv ++++++k++   +p +f+ e+g +      ++le ++g  W+vkl  +++sg+ +l++GW++F +   +  g f++F+++g+s f   v 
  XP_016483682.1  84 FFKVILSPHASKLH---IPDEFVMEYGVD--LRDVVSLEVPDGAMWKVKL--QNCSGMAWLKEGWNRFKEYYSIGCGYFLLFRYNGNSHF--SVF 169
                     88888888888876...*********866..4558***************..*********************************99999..555 PP

                     E CS
              B3  96 v 96 
                     +
  XP_016483682.1 170 I 170
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-2178174IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.27981174IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-2281181IPR015300DNA-binding pseudobarrel domain
CDDcd100178.00E-1782172No hitNo description
SMARTSM010191.7E-1284174IPR003340B3 DNA binding domain
PfamPF023623.4E-1184170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEQRVLSTLI GVSVSKRADL LSSLVTIRSR PMSPDEGIDF SHCSLNKQNF DITSSHKEQT  60
AETAERRLPE EPKPVDSPET PPQFFKVILS PHASKLHIPD EFVMEYGVDL RDVVSLEVPD  120
GAMWKVKLQN CSGMAWLKEG WNRFKEYYSI GCGYFLLFRY NGNSHFSVFI FDLSASEIDY  180
PPGPNEDEIS PGLNEDLTPE ISPGPNENLA PENLCVVAEP EENPLTCQEN SCAETLLMIS  240
QPSRPNV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483682.10.0PREDICTED: B3 domain-containing protein At1g49475-like
TrEMBLA0A1S4B4300.0A0A1S4B430_TOBAC; B3 domain-containing protein At1g49475-like
STRINGXP_009603775.11e-160(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-26B3 family protein