PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016483969.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 228aa MW: 26324.7 Da PI: 9.0812

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016483969.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.1	7e-16	67	112	2	47
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +e+k r+vtfskR++ ++ KA E S+ ++a+v v++fs++gk XP_016483969.1 67 YVESKEARYVTFSKRKASLFRKADEFSTVTGADVGVLLFSPSGKPC 112 5799***************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	20.703	58	118	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.2E-22	58	117	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.18E-22	59	135	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-12	60	80	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-19	68	114	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-12	80	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-12	95	116	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MMKPKQRWCS GGAGDGMVAT EDDRRSYGRQ PWMGCEESLE KKKQREGGAD VFFRRTSRGR 60 QKIEMKYVES KEARYVTFSK RKASLFRKAD EFSTVTGADV GVLLFSPSGK PCSYTSTSVE 120 KITEKFREWK QQNADEGKSS VFQAFDDLCK DIQDENEKAK SRELRYKVMY PGAEIPADKE 180 RLEKFMEMKL RLENINEATK NHIRAERLKF DLNVVPEYEV GESSGTHH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016483969.1	1e-170	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A1S4B548	1e-169	A0A1S4B548_TOBAC; agamous-like MADS-box protein AGL29
STRING	XP_009797678.1	1e-126	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	3e-19	AGAMOUS-like 29