PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484123.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 201aa    MW: 22240.8 Da    PI: 8.324
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-202575155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr ++ +gr++AeIrdp     + +r++lg+f+tae+Aa+a++ a+++l+g
  XP_016484123.1 25 PRYRGVRKRP-WGRFAAEIRDPI----KkTRVWLGTFDTAEDAARAYDDAARALRG 75
                    68********.**********72....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-142575IPR001471AP2/ERF domain
CDDcd000181.69E-202585No hitNo description
PROSITE profilePS5103223.8542683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-332684IPR001471AP2/ERF domain
SMARTSM003804.6E-382689IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-232684IPR016177DNA-binding domain
PRINTSPR003671.9E-112738IPR001471AP2/ERF domain
PRINTSPR003671.9E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MRHRKSAEVN RRGSDLLKQP EADPPRYRGV RKRPWGRFAA EIRDPIKKTR VWLGTFDTAE  60
DAARAYDDAA RALRGPKAKT NFPNLAAITT QQDNNPYGSN QFELFPNSRP ASSSMSSTLE  120
SSSGPRGSGN KLTRMKIPRP VLPPEDCRSD CDSSSSVVDD RCDADQTSSF LPKQPLPFDL  180
NLPPPSDDVD ADDLHVTALC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2222841073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780882.11e-145PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016484123.11e-145PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9SXS86e-35ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A1S4B5Q21e-144A0A1S4B5Q2_TOBAC; ethylene-responsive transcription factor 3-like
TrEMBLA0A1U7WLN71e-144A0A1U7WLN7_NICSY; ethylene-responsive transcription factor 3-like
STRINGXP_009780882.11e-145(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137791113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.16e-22ethylene response factor 7