PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484259.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 609aa    MW: 67185.4 Da    PI: 7.4228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30244301260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK v+g+ef+rsYY+Ct+++C +kk+vers+ d+++++++Y g+H+h+k
  XP_016484259.1 244 EDGYNWRKYGQKLVRGNEFTRSYYKCTYPNCLAKKQVERSH-DGHITDVHYIGKHEHPK 301
                     8****************************************.***************85 PP
2WRKY103.21.4e-32420478159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H+h+
  XP_016484259.1 420 VNDGHRWRKYGQKYVKGNPNPRSYYRCSIAGCPVKKHVERASHDPKMVVTTYEGQHDHN 478
                     58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.436238302IPR003657WRKY domain
SuperFamilySSF1182902.22E-24240301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-26240301IPR003657WRKY domain
SMARTSM007746.3E-34243301IPR003657WRKY domain
PfamPF031064.6E-23244300IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-34406478IPR003657WRKY domain
SuperFamilySSF1182901.31E-28412479IPR003657WRKY domain
PROSITE profilePS5081133.66415480IPR003657WRKY domain
SMARTSM007744.4E-37420479IPR003657WRKY domain
PfamPF031062.8E-25421477IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MTVVYGPSCT LISPRVPASS HRHRIMGTPR EEATNEVSSE NLQRKPDPDP ATNNPELKEK  60
GRCEPISADV VSGEMQKRPS PAADAQASKS NQEETTHPST CQDVSSNVSQ SNQEDISLSK  120
VQQYQSENVR RKQGLKSEGD ASVCSQLSIL PKVSDAKSYG SESGAIEKVV SPLSGKASDS  180
TDQIQSQSME VVVSQSDHQR VTYPIRPEKT LDKLQPRRNP DTSGHGLPSD RGMTLFRLPE  240
KPLEDGYNWR KYGQKLVRGN EFTRSYYKCT YPNCLAKKQV ERSHDGHITD VHYIGKHEHP  300
KTPSGPQTSP GLVVPLQMRQ PDIPVLTTSE EAEGEKSTMR ETCESSKPSE APLALDIVSA  360
GAGMQVTPLK PHKLENEVDK NSGPDSKRQK KDIAKDDTPP IKSHSEPRHI VQTMSEVDIV  420
NDGHRWRKYG QKYVKGNPNP RSYYRCSIAG CPVKKHVERA SHDPKMVVTT YEGQHDHNMS  480
WFRTLSQITT APDLSLTGIS GESRLESGET KHIGESISES GENKHVGESR IESGENKHVG  540
ESRKRVGQSI SESGETKHVR ASISESGETK HVGESRIESG ENKHVGQSRS ESGENKHVNL  600
DMVVHIGAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-31234479275WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0962980.0AF096298.1 Nicotiana tabacum DNA-binding protein 1 (WRKY1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484259.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
TrEMBLA0A1S4B5W60.0A0A1S4B5W6_TOBAC; probable WRKY transcription factor 20 isoform X2
STRINGXP_009606902.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-70WRKY family protein