PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484260.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 603aa    MW: 66543.6 Da    PI: 7.0046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30225282260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK v+g+ef+rsYY+Ct+++C +kk+vers+ d+++++++Y g+H+h+k
  XP_016484260.1 225 EDGYNWRKYGQKLVRGNEFTRSYYKCTYPNCLAKKQVERSH-DGHITDVHYIGKHEHPK 282
                     8****************************************.***************85 PP
2WRKY103.31.4e-32401459159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H+h+
  XP_016484260.1 401 VNDGHRWRKYGQKYVKGNPNPRSYYRCSIAGCPVKKHVERASHDPKMVVTTYEGQHDHN 459
                     58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.436219283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-26221282IPR003657WRKY domain
SuperFamilySSF1182902.22E-24221282IPR003657WRKY domain
SMARTSM007746.3E-34224282IPR003657WRKY domain
PfamPF031064.6E-23225281IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.0E-34387459IPR003657WRKY domain
SuperFamilySSF1182901.29E-28393460IPR003657WRKY domain
PROSITE profilePS5081133.66396461IPR003657WRKY domain
SMARTSM007744.4E-37401460IPR003657WRKY domain
PfamPF031062.8E-25402458IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MVLHRIMGTP REEATNEVSS ENLQRKPDPD PATNNPELKE KGRCEPISAD VVSGEMQKRP  60
SPAADAQASK SNQEETTHPS TCQDVSSNVS QSNQEDISLS KVQQYQSENV RRKQGLKSEG  120
DASVCSQLSI LPKVSDAKSY GSESGAIEKV VSPLSGKASD STDQIQSQSM EVVVSQSDHQ  180
RVTYPIRPEK TLDKLQPRRN PDTSGHGLPS DRGMTLFRLP EKPLEDGYNW RKYGQKLVRG  240
NEFTRSYYKC TYPNCLAKKQ VERSHDGHIT DVHYIGKHEH PKTPSGPQTS PGLVVPLQMR  300
QPDIPVLTTS EEAEGEKSTM RETCESSKPS EAPLALDIVS AGAGMQVTPL KPHKLENEVD  360
KNSGPDSKRQ KKDIAKDDTP PIKSHSEPRH IVQTMSEVDI VNDGHRWRKY GQKYVKGNPN  420
PRSYYRCSIA GCPVKKHVER ASHDPKMVVT TYEGQHDHNM SWFRTLSQIT TAPDLSLTGI  480
SGESRLESGE TKHIGESISE SGETKHIGES ISESGENKHV GESRIESGEN KHVGESRKRV  540
GQSISESGET KHVRASISES GETKHVGESR IESGENKHVG QSRSESGENK HVNLDMVVHI  600
GAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-31215460275WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0962980.0AF096298.1 Nicotiana tabacum DNA-binding protein 1 (WRKY1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484260.10.0PREDICTED: probable WRKY transcription factor 20 isoform X3
TrEMBLA0A1S4B5N40.0A0A1S4B5N4_TOBAC; probable WRKY transcription factor 20 isoform X3
STRINGXP_009606902.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-70WRKY family protein