PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016484291.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 264aa MW: 30850.9 Da PI: 5.0945

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016484291.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.9	7.4e-15	4	42	3	41
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i+++ r+ tf kR++ ++KK +ELS+LCd+++++ii+ XP_016484291.1 4 IQDHKTRKSTFQKRKACLIKKISELSILCDIKACMIIYE 42 889999*******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.09E-17	1	86	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.3E-8	1	52	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.60E-18	1	77	No hit	No description
PROSITE profile	PS50066	13.89	1	45	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-14	4	45	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MELIQDHKTR KSTFQKRKAC LIKKISELSI LCDIKACMII YEGNNCEEIW PNDPNEVQEL 60 INLYKNQPIE DRSKRENSLC SFLENEKKKA EIKMAKLKTK IKTEKYPTWD SRFNYLSEKE 120 LRNLAGVLEK KMENAKGKSE FLKSSRNINQ EIWDYPELMD NFNQSNPQPI SYMDNQFFQE 180 LTADFDQVIS STDHVNSMGI LDNGQLSVGD YQFGNSDYIK IEAENWLVNN GIIGSSSRMQ 240 PMELNQYYPF ICNGSTQMPY GYFQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016484291.1	0.0	PREDICTED: agamous-like MADS-box protein AGL82
TrEMBL	A0A1S4B5Z1	0.0	A0A1S4B5Z1_TOBAC; agamous-like MADS-box protein AGL82
STRING	XP_009598741.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6342	12	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	2e-16	M-type_MADS family protein