PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484419.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 97aa    MW: 11238.6 Da    PI: 9.6434
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-09653347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT++  +++ +a + + ++   +W+  a+ +g g+t++++k ++ k+
   XP_016484419.1  6 TWTPQQNKKFENALAIYDKDtpdRWRNLAKAVGGGKTEEDVKIHYEKL 53
                     7********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.539154IPR017877Myb-like domain
SMARTSM007173.7E-7356IPR001005SANT/Myb domain
SuperFamilySSF466892.84E-12562IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-4559IPR009057Homeodomain-like
PfamPF002499.0E-7653IPR001005SANT/Myb domain
CDDcd001674.64E-5654No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASNSTWTPQ QNKKFENALA IYDKDTPDRW RNLAKAVGGG KTEEDVKIHY EKLVEDIKRI  60
ESGQVPLPKY NKANGGHNNK GYTFNDEEQR LRYLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-27397793RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484419.12e-67PREDICTED: protein RADIALIS-like 5
SwissprotF4JVB86e-29RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S4B6C64e-66A0A1S4B6C6_TOBAC; protein RADIALIS-like 5
STRINGXP_009586717.12e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-31RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]