PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484431.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 315aa    MW: 36028.6 Da    PI: 6.5243
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.22.4e-091985268
        trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68
                    Wt +e l+L++  ++++ + +++ +  ++W++  +++ + g++rs +qCk++we +   y k+k +e
  XP_016484431.1 19 WTLHESLTLVNEMKSTQIECGNTLASFQKWQSTVQNCNSLGVNRSLNQCKKRWEFILENYNKVKPWE 85
                    ****************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-71885No hitNo description
PROSITE profilePS500906.3881975IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MERGDGGSLR TRSQAAPDWT LHESLTLVNE MKSTQIECGN TLASFQKWQS TVQNCNSLGV  60
NRSLNQCKKR WEFILENYNK VKPWETVYWT ASFDGVRKSE LGLPEQFDFE LFNAVGRYLS  120
LLHGEDGGGA ETDPETQQAQ GNNAFLELGH KRQRRRTKPR KYKMEERLNP WRRILNENRK  180
YEQSMVGIKH EASIETKVEA PSYEKSSLQI KREISSPEEK VEPPNLSMVN MVKAEQINVD  240
NPEEMMAATL RENAELITAI IEGNPMDDRD CRLADLKNSE AGRVHLIRSQ GNQLIDCLGK  300
ISDTLSQLCD TIHKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484431.10.0PREDICTED: uncharacterized protein LOC107804978
TrEMBLA0A1S4B6C80.0A0A1S4B6C8_TOBAC; uncharacterized protein LOC107804978
STRINGXP_009780883.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83602124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.13e-47sequence-specific DNA binding transcription factors