PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016484627.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 125aa MW: 14476.5 Da PI: 9.9989

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016484627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	141.8	4.1e-44	12	125	1	112
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_016484627.1 12 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEicRIGSgPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 105 69**************************.9***********954555442556******************************** PP NAM 93 lskkgelvglkktLvfykgr 112 + ++++ +g++ktLvfy+gr XP_016484627.1 106 YLSNSKRIGMRKTLVFYTGR 125 ***************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-44	4	125	IPR003441	NAC domain
PROSITE profile	PS51005	43.615	12	125	IPR003441	NAC domain
Pfam	PF02365	3.6E-22	13	123	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MMSGAGNGQL SVPPGFRFHP TDEELLYYYL RKKVSYEAID LDVIREVDLN KLEPWDLKEI 60 CRIGSGPQNE WYFFSHKDKK YPTGTRTNRA TAAGFWKATG RDKAIYLSNS KRIGMRKTLV 120 FYTGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-36	6	125	9	124	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	2e-60	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009619245.1	1e-88	PREDICTED: NAC domain-containing protein 76 isoform X1
Refseq	XP_009619246.1	1e-88	PREDICTED: NAC domain-containing protein 76 isoform X1
Refseq	XP_009619248.1	1e-88	PREDICTED: NAC domain-containing protein 76 isoform X2
Refseq	XP_016484627.1	2e-90	PREDICTED: NAC domain-containing protein 76-like, partial
Swissprot	Q9MA17	2e-77	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A1S4B705	5e-89	A0A1S4B705_TOBAC; NAC domain-containing protein 76-like
TrEMBL	A0A1S4C031	8e-87	A0A1S4C031_TOBAC; NAC domain-containing protein 76 isoform X2
TrEMBL	A0A1U7XSY7	8e-87	A0A1U7XSY7_NICSY; NAC domain-containing protein 76 isoform X2
STRING	XP_009619245.1	4e-88	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	1e-68	NAC family protein

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]