PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016484705.1

Common Name

upp-L

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 362aa MW: 40213.9 Da PI: 6.8778

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016484705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	1.9e-09	194	241	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_016484705.1 194 SHSLAERVRREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 241 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.32E-11	188	245	No hit	No description
SuperFamily	SSF47459	5.63E-17	188	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.796	190	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-16	190	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	194	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	196	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MAAFSDQLQH TNPFLLDSVF LPSSPIKMSG FLEEQNNSIV QNCFTQFYQP ESFQQLPTAN 60 VIVHESSYCL DQSTNVTLSQ NELNSMTNNS SSSVSLDMDS SSVTDKIESG NKPNFIPMDK 120 KRKSREGSSS MSSAHSKNVK QVDNGKKKKS NSQSVGKDEK KGKDDNKKEE KKANEEAPTG 180 YIHVRARRGQ ATDSHSLAER VRREKISERM KILQSLVPGC DKVTGKALML DEIINYVQSL 240 QNQVEFLSMK LASSNPMYYD FGMDLDALMV RPDQSLSGLG TPLPNMQQTS PTNITSQAAE 300 VIPNINNSGY PFLDNSASLM FQQVHFPNSI SQGNGQLLWG ADDQRQKLIN QSGLSNNFCS 360 FH

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MAAFSDQLQH TNPFLLDSVF LPSSPIKMSG FLEEQNNSIV QNCFTQFYQP ESFQQLPTAN  60
VIVHESSYCL DQSTNVTLSQ NELNSMTNNS SSSVSLDMDS SSVTDKIESG NKPNFIPMDK  120
KRKSREGSSS MSSAHSKNVK QVDNGKKKKS NSQSVGKDEK KGKDDNKKEE KKANEEAPTG  180
YIHVRARRGQ ATDSHSLAER VRREKISERM KILQSLVPGC DKVTGKALML DEIINYVQSL  240
QNQVEFLSMK LASSNPMYYD FGMDLDALMV RPDQSLSGLG TPLPNMQQTS PTNITSQAAE  300
VIPNINNSGY PFLDNSASLM FQQVHFPNSI SQGNGQLLWG ADDQRQKLIN QSGLSNNFCS  360
FH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HE653924	0.0	HE653924.1 Nicotiana tabacum mRNA for bHLH trascription factor (upp-L gene), cultivar Samsun nn.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312696.1	0.0	transcription factor bHLH137-like
Refseq	XP_009786910.1	0.0	PREDICTED: transcription factor bHLH137
Swissprot	Q93W88	4e-59	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A0A1U7XK93	0.0	A0A1U7XK93_NICSY; transcription factor bHLH137
TrEMBL	M5BCF4	0.0	M5BCF4_TOBAC; BHLH transcription factor
STRING	XP_009786910.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4116	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	2e-56	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Lukhovitskaya NI, et al. An RNA virus-encoded zinc-finger protein acts as a plant transcription factor and induces a regulator of cell size and proliferation in two tobacco species. Plant Cell, 2013. 25(3): p. 960-73 [PMID:23482855] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]