PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016484723.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 776aa MW: 88015.6 Da PI: 6.8705

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016484723.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.3	2.5e-08	45	86	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ +++++ +C+a+l+v+++ ++kw+vtk +eH+H+l+ XP_016484723.1 45 DEVVEPQTVYGESCDAMLRVELKGQNKWVVTKYMKEHSHSLV 86 3566678888899***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-6	45	86	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-27	224	315	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.226	502	538	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-9	502	536	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-6	513	540	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MDVEVIDVEQ GSMQHQGGIT DDGDDEPSES GEANVNGRSN APERDEVVEP QTVYGESCDA 60 MLRVELKGQN KWVVTKYMKE HSHSLVHPNK VHYHTSHRHF AVAKKNGPEN NQGVGIVPSG 120 VMYVSVDGNR IPLEINRGAK STRSAESDQT VKDNVPQSFS PRQCNQRRTL GRVAQNLLNY 180 FKKMQAENPG FYYAIQLDKD NRMANVFWAD ARSRNAYSHF GDAVILDTMY RVNQCRVPFA 240 PFTGVNHHGQ TILFGCALLL DESEATFVWL FKTFLAAMND RAPVSIITDQ DTVIQSAVAQ 300 VFPGTRHCIN KWHVLRGGQD RMAHVCHMYP NFQVELYNCI NLTETVEEFE SYWETILEKY 360 DLKKNDWLQS IYNTRRQWVP AYFRDTFFAA LSPNQEYECS FFDGYVNQQI TLPLFFRQYE 420 RALENSFEKE IEADFDTICT TPPLRTPSPM EKQAATLYTK KIFLKFQEEL VETFVYTANR 480 IDGDGALSTF RVAKFEDDQK AYVVSLNISE LKANCSCQMF ECSGILCRHI LTVFTVTNVL 540 TLPSHYILKR WTINAKCRAE SDDHVQLHGT ESMAQKYNSL CREAIRYAEE GAVAQETYKA 600 ALAALKEGGK KVALAKRNVA KVSPPSSQVS GVGYDDRRMS ASAPEMTPLL WPRQDEMTKR 660 FNLNDTGIPA RTIADLNAQR MAPVSLHRGD GHADNTVILP CLKSMTWVME NKTSTPANRV 720 AVINLKLQDY SRTLSRESEV KFQLSRVTLE PMLKSMAYIS EQLSTPANRV AVINLK

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MDVEVIDVEQ GSMQHQGGIT DDGDDEPSES GEANVNGRSN APERDEVVEP QTVYGESCDA  60
MLRVELKGQN KWVVTKYMKE HSHSLVHPNK VHYHTSHRHF AVAKKNGPEN NQGVGIVPSG  120
VMYVSVDGNR IPLEINRGAK STRSAESDQT VKDNVPQSFS PRQCNQRRTL GRVAQNLLNY  180
FKKMQAENPG FYYAIQLDKD NRMANVFWAD ARSRNAYSHF GDAVILDTMY RVNQCRVPFA  240
PFTGVNHHGQ TILFGCALLL DESEATFVWL FKTFLAAMND RAPVSIITDQ DTVIQSAVAQ  300
VFPGTRHCIN KWHVLRGGQD RMAHVCHMYP NFQVELYNCI NLTETVEEFE SYWETILEKY  360
DLKKNDWLQS IYNTRRQWVP AYFRDTFFAA LSPNQEYECS FFDGYVNQQI TLPLFFRQYE  420
RALENSFEKE IEADFDTICT TPPLRTPSPM EKQAATLYTK KIFLKFQEEL VETFVYTANR  480
IDGDGALSTF RVAKFEDDQK AYVVSLNISE LKANCSCQMF ECSGILCRHI LTVFTVTNVL  540
TLPSHYILKR WTINAKCRAE SDDHVQLHGT ESMAQKYNSL CREAIRYAEE GAVAQETYKA  600
ALAALKEGGK KVALAKRNVA KVSPPSSQVS GVGYDDRRMS ASAPEMTPLL WPRQDEMTKR  660
FNLNDTGIPA RTIADLNAQR MAPVSLHRGD GHADNTVILP CLKSMTWVME NKTSTPANRV  720
AVINLKLQDY SRTLSRESEV KFQLSRVTLE PMLKSMAYIS EQLSTPANRV AVINLK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016484723.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like, partial
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1S4B7F1	0.0	A0A1S4B7F1_TOBAC; protein FAR1-RELATED SEQUENCE 3-like
STRING	XP_009776131.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]