PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484781.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 366aa    MW: 41395.8 Da    PI: 5.4088
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.92.2e-3193157165
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 
                     a+g+kdrhsk++T+ g+RdRRvRls ++a++f+d+qd+LG+d++s++i+WL+++ak+ai++l + 
  XP_016484781.1  93 ATGRKDRHSKVSTAMGPRDRRVRLSPNTAIQFYDVQDRLGYDRPSEAIDWLIKEAKAAIDALGKF 157
                     589**********************************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-2994162IPR005333Transcription factor, TCP
PROSITE profilePS5136929.93696154IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MNHPLQISEE EDGSSEEEEE EEEVFEENGI ENFHSHCQNQ HLQQLPMPLC PKPTKWTNFT  60
TYKEELNKVT KCMKPKRAKQ DVIEVHRGRI IRATGRKDRH SKVSTAMGPR DRRVRLSPNT  120
AIQFYDVQDR LGYDRPSEAI DWLIKEAKAA IDALGKFPKL NAKIQYSFDQ LLDEGCIEQR  180
PRFGQQNYGI PSSEYGVQNH QQEVNYGIPI QNVSLLSSAD GAIFSEFQSY PHGHFLNFQS  240
FQEDTILSSG GHHDSFLTSS FPIYTNSNLE MTRYKRSLNG NVASSNSGNG EDYSSFSLLA  300
HHFPSVLSED KVISHREPLQ SSFFPLISGD PLSTQLQTLS YDGLSGQISS APRIQGEEEQ  360
GTFSAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-19101154154Putative transcription factor PCF6
5zkt_B5e-19101154154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794860.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016484781.10.0PREDICTED: transcription factor TCP4-like
TrEMBLA0A1S4B7C50.0A0A1S4B7C5_TOBAC; transcription factor TCP4-like
TrEMBLA0A1U7Y7R50.0A0A1U7Y7R5_NICSY; transcription factor TCP4-like
STRINGXP_009794860.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.14e-35TCP domain protein 10