PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484783.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 312aa    MW: 35528 Da    PI: 10.1001
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484783.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.44e-1118921098
                    HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +k+g + +p  f  ++ +    ++++  +  + g++W vk+  +++        GW +F+++++L+ gD +vF+++g++ef   v++f 
  XP_016484783.1 18 GFKHG-IKIPIAFS-KYlN---GCNQEHAILRRAGKKWVVKV--NGRL-----L-GWGKFAEEHDLQLGDCLVFRHEGNMEF--EVSIFG 92
                    55665.99999998.6632...35667888899*********..5553.....3.8*********************99999..888876 PP
2B347.92.4e-15161248597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +++++ l+++ l lp +fa+e+++ +++  t+t++de   sW++ l    +++++++++ W++F+ angLkegD ++++ +  +++++ +kv+
  XP_016484783.1 161 TIKPYCLSKSFLQLPGPFARENDLRNRK-CTITIRDE-QMSWTFSL--YSSGSHTFIGGVWSKFCIANGLKEGDQIMLEIVA-NGKNPILKVY 248
                     56889999999***********988655.59**9995.579*****..88888899***********************876.6666787776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-18396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-186100IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-14991No hitNo description
SMARTSM010194.3E-131194IPR003340B3 DNA binding domain
PfamPF023623.2E-81991IPR003340B3 DNA binding domain
PROSITE profilePS508639.6156094IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-15154244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-16155245IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-13156249No hitNo description
PROSITE profilePS5086311.265157251IPR003340B3 DNA binding domain
SMARTSM010195.3E-15157251IPR003340B3 DNA binding domain
PfamPF023621.2E-13161248IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MMKIPPKKPH FFKPILPGFK HGIKIPIAFS KYLNGCNQEH AILRRAGKKW VVKVNGRLLG  60
WGKFAEEHDL QLGDCLVFRH EGNMEFEVSI FGSSKCEREY EQPLQGVSEG EEERDHSCKK  120
ITPQVNTTEK PKLNIKSSHK AFPNVEAAQD MPLDRPYFIY TIKPYCLSKS FLQLPGPFAR  180
ENDLRNRKCT ITIRDEQMSW TFSLYSSGSH TFIGGVWSKF CIANGLKEGD QIMLEIVANG  240
KNPILKVYDL MGNASLQPKG KKTNFDTKRV STEDLRANAS RQREGKKPKL DARRVSTRVS  300
SSGFCKIKWL GE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484783.10.0PREDICTED: B3 domain-containing protein REM17-like
TrEMBLA0A1S4B7K80.0A0A1S4B7K8_TOBAC; B3 domain-containing protein REM17-like
STRINGXP_009769360.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-29B3 family protein