PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485046.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 284aa    MW: 31200.6 Da    PI: 8.3532
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.21.4e-15214248133
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                     C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ k
  XP_016485046.1 214 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANK 248
                     *****99999**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.2176111IPR010399Tify domain
SMARTSM009796.9E-976111IPR010399Tify domain
PfamPF062004.0E-1180109IPR010399Tify domain
PfamPF062037.9E-15145186IPR010402CCT domain
PROSITE profilePS5101712.709145187IPR010402CCT domain
SMARTSM004014.4E-8208266IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-9209250No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13212248IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.42E-11213248No hitNo description
PfamPF003202.8E-13214248IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEAANTRAIG FEEEYMNVAI RVDEYGGGGF NADDISGGCE SSGTEELQHV CSSVPPLSAC  60
PVVDSDGRVL AAMPMPSRRT SELTISFEGQ VYVFPAVTPD KVQAVLLLLE GSDMASYVPS  120
SHSLALETIK SVDNDAPTRP NISRRIASLI RFREKRKERC FEKKVRYTCR KEVAQRMHRK  180
NGQFASLKDG EKTYAGNIDS GDSIPHPEPT LRRCQHCGIS ESETPAMRRG PSGPRTLCNA  240
CGLMWANKVL HSGSACSFCP SPQPKKIRFL KLTLLMLSSF NHRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754407e-47HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485046.10.0PREDICTED: GATA transcription factor 19-like isoform X1
SwissprotQ5Z4U51e-50GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A1S4B8370.0A0A1S4B837_TOBAC; GATA transcription factor 19-like isoform X1
STRINGXP_009776483.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-42ZIM-like 1