PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016485051.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 335aa MW: 36886.4 Da PI: 10.6359

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016485051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.0004	245	264	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 C C+ F +++nL++H++ XP_016485051.1 245 MCDLCNVKFDTRENLRSHLS 264 6*****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.28E-8	21	72	No hit	No description
SMART	SM00451	0.18	34	68	IPR003604	Zinc finger, U1-type
SMART	SM00355	17	37	61	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	4.0E-4	38	61	No hit	No description
PROSITE pattern	PS00028	0	39	61	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.4E-9	97	150	No hit	No description
SMART	SM00451	0.0023	112	146	IPR003604	Zinc finger, U1-type
SMART	SM00355	11	115	139	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	117	139	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.3E-5	117	140	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00451	6.4E-5	241	275	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	2.93E-8	243	275	No hit	No description
SMART	SM00355	0.11	244	268	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	3.8E-7	245	268	No hit	No description
PROSITE pattern	PS00028	0	246	268	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MRLLLQAGQS LDKGGTRGGV QHKSGGRGKF SNIAGVARCE LCKIDCGKIS SLKQHESGKR 60 HRRSLKKLEA ENRTVSDIQN VQKPSGDLKP GTNMKPGGQH KSGGRGKFSN IAGVARCELC 120 KIDYGNMTSL KQHESGKRHR KNLKKLEAEN RTVSDIQNVQ KPSGDLKPET NMKPDDLPKE 180 EETKQNPPPL DTILSEIRLG TELKINDAQC DVVPTRGLKR KMLGGEGQAK KISKAKRRLF 240 VIPLMCDLCN VKFDTRENLR SHLSGRKHKS KLKCFEGRLG LQALYPPNHI TQTAYHWQGV 300 QQIFKATQVS DPIAGASVLP QTHNATPSAT GVSII

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016485051.1	0.0	PREDICTED: zinc finger protein 385D-like
TrEMBL	A0A1S4B841	0.0	A0A1S4B841_TOBAC; zinc finger protein 385D-like
STRING	XP_009758378.1	0.0	(Nicotiana sylvestris)