PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485053.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 255aa    MW: 28146 Da    PI: 8.624
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.51.2e-15185219133
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                     C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ k
  XP_016485053.1 185 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANK 219
                     *****99999**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513209.47676111IPR010399Tify domain
PfamPF062001.2E-680101IPR010399Tify domain
PfamPF062036.7E-15116157IPR010402CCT domain
PROSITE profilePS5101712.709116158IPR010402CCT domain
SMARTSM004014.4E-8179237IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-9180221No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13183219IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.30E-11184219No hitNo description
PROSITE patternPS003440185212IPR000679Zinc finger, GATA-type
PfamPF003202.4E-13185219IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEAANTRAIG FEEEYMNVAI RVDEYGGGGF NADDISGGCE SSGTEELQHV CSSVPPLSAC  60
PVVDSDGRVL AAMPMPSRRT SELTISFEGQ VYVFPAVTPD KSVDNDAPTR PNISRRIASL  120
IRFREKRKER CFEKKVRYTC RKEVAQRMHR KNGQFASLKD GEKTYAGNID SGDSIPHPEP  180
TLRRCQHCGI SESETPAMRR GPSGPRTLCN ACGLMWANKV LHSGSACSFC PSPQPKKIRF  240
LKLTLLMLSS FNHRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754406e-47HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485053.10.0PREDICTED: GATA transcription factor 20-like isoform X2
SwissprotQ5Z4U57e-43GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A1S4B8D70.0A0A1S4B8D7_TOBAC; GATA transcription factor 20-like isoform X2
STRINGXP_009776483.11e-154(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.26e-33ZIM-LIKE 2