PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485220.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 596aa    MW: 64684.1 Da    PI: 7.736
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.93.1e-16205244140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_016485220.1 205 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 244
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.4E-20205246IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163416.981205245IPR005172CRC domain
PfamPF036381.2E-12208243IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
FTIAPHPPST TKVSSIPTVE ESSVVPPSSP ATLLTYHRRS RPTSGPTGSR PAPALEADPA  60
PSTPIALRKG IRTTLNPNPH YVGLSYHRLX FVGTLLQVSD GITNLKQHLF QHFQTKDLGR  120
LKYFLRIEVA QFSSVVRIIR YIKSVPGKGL LFEDLGHEQI NYCMQEVSEE TDLDAFACNG  180
LQTATLRADL QSMQEEAGDG LVLPKHNKGC HCKKSGCLKK YCECFQANIL CSENCKCMDC  240
KNFEGSQERQ ALFHGDHANN MAYLQQAANA AITGAIGSSG YGSPPVNKKR KAQELFFGSM  300
IKDPVHRLGQ LQQESQIKAS VPPSPLSSIP GPRVGNAAAL GPSKFTYRSL LADLIHPHDI  360
KELCSVLVDY AWEAGRMLAD ERDASLKQAK CHSEASYPSS GIEKVIPDDC SNAVRAENMD  420
ESSLDSANVP KERPMSPGTL ALMCDEQNTI FTAAAAPPND PTSLSNNTSS QLPHGQGMKE  480
VYPELEKIVL TRTRDCLKKL ITLGELKETK CSSMVRGADS GSQNEVNGNG IAMTDSRNQH  540
EPFRNGVANT VPTPPPPPPP PQKVEPGTTA FNNNPCPKVH PPDGNGDVKS KICNKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1520525483132Protein lin-54 homolog
5fd3_B7e-1520525483132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485220.10.0PREDICTED: protein tesmin/TSO1-like CXC 5, partial
SwissprotQ9SZD11e-104TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1S4B8G50.0A0A1S4B8G5_TOBAC; protein tesmin/TSO1-like CXC 5
STRINGXP_009595583.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-107Tesmin/TSO1-like CXC domain-containing protein