PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016485321.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 130aa MW: 14722.9 Da PI: 10.0499

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016485321.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33.1	7.3e-11	18	55	4	41
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ++k+ ++ +s+ +n + K A LS+LC++++a+iifs XP_016485321.1 18 KDKRAEKIALSNKQNALSKRATDLSTLCGIDIAIIIFS 55 7889999******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0029	1	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.105	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-14	9	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-6	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-9	18	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-6	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-6	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MARMTSQMKS KSEKKILKDK RAEKIALSNK QNALSKRATD LSTLCGIDIA IIIFSIATEP 60 FFFGNPNVES VVERFSQAKQ PFYRMSSRKT THEKTGGGEE NDTMKKEKRK AINEEEKGES 120 TLEIFEPTTL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774123.1	4e-90	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_016485321.1	1e-90	PREDICTED: agamous-like MADS-box protein AGL29, partial
TrEMBL	A0A1S4B8V3	3e-89	A0A1S4B8V3_TOBAC; agamous-like MADS-box protein AGL29
TrEMBL	A0A1U7W685	9e-89	A0A1U7W685_NICSY; agamous-like MADS-box protein AGL61
STRING	XP_009774123.1	2e-89	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-08	AGAMOUS-like 61