PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016485341.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 440aa MW: 49935.6 Da PI: 9.5804

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016485341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.3e-27	31	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YneYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a ++++++++gk+++t+++++HnH+l XP_016485341.1 31 CYNEYAAAIGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRD-QTVQKHRKETRTGCLAYIVISRQSNGKFRITSFDEKHNHPLD 118 7****************************************999.99999*********************************97 PP
2	FAR1	85	1.2e-26	175	262	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YneYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a++ ++++++gk+++t++e++HnH+l XP_016485341.1 175 WYNEYAAAMGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRD-RTVQKHRKETRTGCLAHIIISRQSNGKFRITSFEEKHNHSLD 262 7****************************************999.99999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-24	31	119	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	9.9E-24	175	263	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MEISSCESQG GFNVPIKLGM EFDSDEHAYE CYNEYAAAIG FSVRKEYANK NKVQGYVTSR 60 KFTCHKEGYR SKDKRDQTVQ KHRKETRTGC LAYIVISRQS NGKFRITSFD EKHNHPLDPS 120 SLSHMLPSQR KINVAQAHEV TARFMEITSS ESQGGCNVPI KLGMEFDSDE HAYEWYNEYA 180 AAMGFSVRKE YANKNKVQGY VTSRKFTCHK EGYRSKDKRD RTVQKHRKET RTGCLAHIII 240 SRQSNGKFRI TSFEEKHNHS LDPSSLSHVL PTQRKIKVAQ AHKVSVRYKH LCQMFSQISS 300 EASESKEGYE LAAKCANELV VKLKHVKKNE SHDDSAPSKS IENELSETVF IDNTNATKVT 360 GLKRKQPTCR SKTLTMSFME MAKRKNNTSL LKSPQCQTDK KLDHLPSLLS CQVTCPSLSD 420 ASMTTGVAEA SCLKDHPMKV

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MEISSCESQG GFNVPIKLGM EFDSDEHAYE CYNEYAAAIG FSVRKEYANK NKVQGYVTSR  60
KFTCHKEGYR SKDKRDQTVQ KHRKETRTGC LAYIVISRQS NGKFRITSFD EKHNHPLDPS  120
SLSHMLPSQR KINVAQAHEV TARFMEITSS ESQGGCNVPI KLGMEFDSDE HAYEWYNEYA  180
AAMGFSVRKE YANKNKVQGY VTSRKFTCHK EGYRSKDKRD RTVQKHRKET RTGCLAHIII  240
SRQSNGKFRI TSFEEKHNHS LDPSSLSHVL PTQRKIKVAQ AHKVSVRYKH LCQMFSQISS  300
EASESKEGYE LAAKCANELV VKLKHVKKNE SHDDSAPSKS IENELSETVF IDNTNATKVT  360
GLKRKQPTCR SKTLTMSFME MAKRKNNTSL LKSPQCQTDK KLDHLPSLLS CQVTCPSLSD  420
ASMTTGVAEA SCLKDHPMKV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016485341.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X2
TrEMBL	A0A1S4B8X2	0.0	A0A1S4B8X2_TOBAC; protein FAR1-RELATED SEQUENCE 12-like isoform X2
STRING	XP_009765927.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	4e-32	FAR1-related sequence 7