PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485379.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 165aa    MW: 18732.4 Da    PI: 7.9901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.6e-211465256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+G+r+++ +g+++AeIrdp+ ng   r +lg+f taeeAa+a+++a+ +l+g+
  XP_016485379.1 14 KYRGIRRRP-WGKYAAEIRDPTRNG--SRLWLGTFETAEEAARAYDRAAFSLRGH 65
                    8********.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-141465IPR001471AP2/ERF domain
CDDcd000181.28E-291474No hitNo description
SMARTSM003807.3E-361478IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-241473IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-321473IPR001471AP2/ERF domain
PROSITE profilePS5103224.9481472IPR001471AP2/ERF domain
PRINTSPR003671.4E-111526IPR001471AP2/ERF domain
PRINTSPR003671.4E-113854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDSNEDQRGR RENKYRGIRR RPWGKYAAEI RDPTRNGSRL WLGTFETAEE AARAYDRAAF  60
SLRGHQAILN FPNDGHYHHN NNTKVPLGPG PSYASSMGNA HMSASSSLPS SSSATASSDQ  120
QENVRLEGHD HEEKVIEFEY FDNNLLDELL GSQVHRQANK RPKFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-29174174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610278.11e-121PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_016485379.11e-121PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC54e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S4B9251e-119A0A1S4B925_TOBAC; ethylene-responsive transcription factor ERF098-like
STRINGXP_009610278.11e-120(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-29ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]