PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485761.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 203aa    MW: 23413.5 Da    PI: 8.4761
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485761.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-182174457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    + +++++q+++Lee F +++++  e++++LAk+lg++ rq+ +W+qN+Ra++k+
  XP_016485761.1 21 KKRLNQDQVKRLEESFDSTKKLEPEQKTQLAKELGVPPRQIAIWYQNKRARWKN 74
                    56799***********************************************95 PP
2HD-ZIP_I/II105.73.6e-3420111293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+rl+++qvk LEesF++++kLepe+K++la+eLg+ prq+a+W+qn+RAR+k++ l  dy+aL++++d+  +e++++eke+e+Lr elk+
  XP_016485761.1  20 NKKRLNQDQVKRLEESFDSTKKLEPEQKTQLAKELGVPPRQIAIWYQNKRARWKNQSLGLDYNALQHKLDTALAEKRKIEKENERLRVELKK 111
                     79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.371575IPR001356Homeobox domain
SMARTSM003892.9E-141879IPR001356Homeobox domain
CDDcd000861.73E-132176No hitNo description
PfamPF000467.0E-162174IPR001356Homeobox domain
SuperFamilySSF466891.31E-162184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-192280IPR009057Homeodomain-like
PRINTSPR000313.5E-54655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000313.5E-55571IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNNFLNSQYL HKHQSILNHN KKRLNQDQVK RLEESFDSTK KLEPEQKTQL AKELGVPPRQ  60
IAIWYQNKRA RWKNQSLGLD YNALQHKLDT ALAEKRKIEK ENERLRVELK KVNEMLVACK  120
KAQGHEETQG LIPLIAANSI SSGCEEVVVS SSFQEDVSCS LVKNNSESNL QFDELYACLM  180
GGEEGSNCRL SWQNGKDLWV WKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485761.11e-148PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A1S4BA251e-147A0A1S4BA25_TOBAC; homeobox-leucine zipper protein ATHB-52-like
STRINGXP_009608121.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-28homeobox protein 52