PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485764.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 23004.3 Da    PI: 10.1241
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485764.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29.1e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rqvtfskRr+g+lKKA+ELS+LCdaeva++ifs++gk y ++s
  XP_016485764.1  9 KRIENQTSRQVTFSKRRTGLLKKAFELSILCDAEVALLIFSPSGKAYQFAS 59
                    79**********************************************986 PP
2K-box63.76.7e-22871711498
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +e  + e++ + + i++L+   +h+ Ged+++L +keL+qLe+qL  ++++iRskK  ++ e+i+ l+++ k l+een  L+k++
  XP_016485764.1  87 TEVRRFEIEDMTRTIDELEARDKHFAGEDISTLGMKELKQLERQLRIGVERIRSKKRCIISEHINWLKRRHKILHEENIHLQKQV 171
                     555667999**********99*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.057161IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-31280IPR002100Transcription factor, MADS-box
CDDcd002652.95E-38278No hitNo description
PRINTSPR004046.6E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.16287179IPR002487Transcription factor, K-box
PfamPF014863.8E-2191171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRGKVELKR IENQTSRQVT FSKRRTGLLK KAFELSILCD AEVALLIFSP SGKAYQFASH  60
DIDRTILRYK NEVGLSKSTN DQGFRATEVR RFEIEDMTRT IDELEARDKH FAGEDISTLG  120
MKELKQLERQ LRIGVERIRS KKRCIISEHI NWLKRRHKIL HEENIHLQKQ VRLHELREGE  180
GSSTILDSDA SFELISKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-24169169Myocyte-specific enhancer factor 2B
1tqe_Q9e-24169169Myocyte-specific enhancer factor 2B
1tqe_R9e-24169169Myocyte-specific enhancer factor 2B
1tqe_S9e-24169169Myocyte-specific enhancer factor 2B
5f28_A8e-24181183MEF2C
5f28_B8e-24181183MEF2C
5f28_C8e-24181183MEF2C
5f28_D8e-24181183MEF2C
6c9l_A9e-24169169Myocyte-specific enhancer factor 2B
6c9l_B9e-24169169Myocyte-specific enhancer factor 2B
6c9l_C9e-24169169Myocyte-specific enhancer factor 2B
6c9l_D9e-24169169Myocyte-specific enhancer factor 2B
6c9l_E9e-24169169Myocyte-specific enhancer factor 2B
6c9l_F9e-24169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2706241e-160KF270624.1 Solanum lycopersicum cultivar Florida Petite TM8-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485764.11e-141PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLA0A1S4BA711e-140A0A1S4BA71_TOBAC; truncated transcription factor CAULIFLOWER D-like isoform X1
STRINGPGSC0003DMT4000393131e-108(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-48AGAMOUS-like 20