PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485858.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 225aa    MW: 26062.8 Da    PI: 9.1016
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-121470147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..........kgRtlkqcksrwqky 47
                     +g+WT+eEd ll +++++ G g+W++ +              +gRt++++k+rw++ 
   XP_016485858.1 14 KGAWTAEEDMLLTNYIELNGEGNWRSLPMNAEerkfqsrgrlQGRTDNEIKNRWNTN 70
                     79****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-17578IPR009057Homeodomain-like
SuperFamilySSF466892.77E-13878IPR009057Homeodomain-like
PROSITE profilePS5129416.49975IPR017930Myb domain
SMARTSM007172.7E-101373IPR001005SANT/Myb domain
PfamPF002491.6E-101471IPR001005SANT/Myb domain
CDDcd001671.00E-81671No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRAPCCSKV GIRKGAWTAE EDMLLTNYIE LNGEGNWRSL PMNAEERKFQ SRGRLQGRTD  60
NEIKNRWNTN LLKKLKVAGI QPKPQKLTAK RTKATKKKRR RGRKAKKPES EIEKDEKIQV  120
HIPKPIRLYS LSSSQSSFQD KAAHNIITML SYEEVDKNKE EEKIQEPLIP SSSSYLFDEK  180
GNEIYELFDE LLNGCDFSTE CLEPTSSCYM LKEVYTEYFQ LLSEI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195100KKKRRR
295103KKKRRRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485858.11e-166PREDICTED: transcription factor MYB12-like
TrEMBLA0A1S4BAL31e-165A0A1S4BAL3_TOBAC; transcription factor MYB12-like
STRINGXP_009631626.11e-140(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1824834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.18e-23myb domain protein 41