PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486002.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 423aa    MW: 48328.6 Da    PI: 7.3858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12244290354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h e+Er RR+++N++f  Lr+++P        K++Ka+ L  Av YIk+L
  XP_016486002.1 244 MNHVEAERIRREKLNHRFYALRSVVPYV-----SKMDKASLLADAVTYIKEL 290
                     589************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-4217173IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.06E-18239313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.901241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-13244295No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16245309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10245290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MENLISTTSS TSQPNALQKI LQYIVHSRQE WWVYSIFWQA TKDVNNRFIL SWGDAHFRGT  60
KDISSAKTGH QLQKKFGFET NVTDSEWFYM VSMPQCFVAE DELVVRAYSS ATHVWLASHY  120
ELQLYNCERA KEADSHGIRT LVCIATPCGV VELGSSDVIQ ENWEFVQLIR SLFGSNNNNI  180
TSHLPINQVT LRDHQKERDG SPQQEPDKRK QEIVTETAIN NINRSRKRKA DSSSIITGRS  240
EMAMNHVEAE RIRREKLNHR FYALRSVVPY VSKMDKASLL ADAVTYIKEL KAKVEDLESK  300
IQSQKPKNNL MEQHDSHSAS SAVFDPANNK SFSSSNGGRN GMEIEVKIIG TEAMIRVQSL  360
DVNYPCARLM NVFREMEFQI YHASVSSFKD LMLQDIVIRV PDEYSNKEAL KSAIMTRLCG  420
IDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-26151767195Transcription factor MYC3
4rqw_B6e-26151767195Transcription factor MYC3
4rs9_A6e-26151767195Transcription factor MYC3
4yz6_A6e-26151767195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207228KRKQEIVTETAINNINRSRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765330.10.0PREDICTED: transcription factor MYC2-like
RefseqXP_016486002.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1S4BAV20.0A0A1S4BAV2_TOBAC; transcription factor MYC2-like
TrEMBLA0A1U7VTT00.0A0A1U7VTT0_NICSY; transcription factor MYC2-like
STRINGXP_009765330.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-71bHLH family protein