PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486089.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 242aa    MW: 28798.6 Da    PI: 10.1365
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486089.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.1e-191360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
   XP_016486089.1 13 KGPWTAEEDRLLIQYVNLHGEGRWNSVARFAGLKRNGKSCRLRWVNYL 60
                     79********************************************97 PP
2Myb_DNA-binding491.4e-1566110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+++++++++ +G++ W+tIar ++ gRt++++k++w+++
   XP_016486089.1  66 RGQITPYEEKIILELHAIWGNR-WSTIARGLP-GRTDNEIKNYWRTH 110
                      6788999***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.554864IPR017930Myb domain
SuperFamilySSF466898.07E-3011107IPR009057Homeodomain-like
SMARTSM007173.4E-171262IPR001005SANT/Myb domain
PfamPF002497.3E-181360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-241467IPR009057Homeodomain-like
CDDcd001678.16E-121560No hitNo description
SMARTSM007171.7E-1365113IPR001005SANT/Myb domain
PROSITE profilePS5129419.09265115IPR017930Myb domain
PfamPF002492.3E-1366110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2468116IPR009057Homeodomain-like
CDDcd001671.02E-870111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGNWRVIEEE WRKGPWTAEE DRLLIQYVNL HGEGRWNSVA RFAGLKRNGK SCRLRWVNYL  60
RPDLKRGQIT PYEEKIILEL HAIWGNRWST IARGLPGRTD NEIKNYWRTH FKKKVKKSST  120
DKAEKTKARL LKRQQFQQQQ QQQQLNNQND MKRLVSLFEE KENNRVPNLY SQGKQEMAFL  180
YQNTANQEQG GGFFYSTKAS SKYEDIIWDY GLWNLDDFNA NLKIGVYYNS LPCMQTLATP  240
FY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-27511519128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486087.10.0PREDICTED: myb-related protein MYBAS1-like isoform X1
RefseqXP_016486088.10.0PREDICTED: myb-related protein MYBAS2-like isoform X2
RefseqXP_016486089.10.0PREDICTED: myb-related protein MYBAS2-like isoform X2
TrEMBLA0A1S4BB371e-180A0A1S4BB37_TOBAC; myb-related protein MYBAS1-like isoform X1
TrEMBLA0A1S4BB921e-180A0A1S4BB92_TOBAC; myb-related protein MYBAS2-like isoform X2
STRINGXP_009604711.11e-160(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-69myb domain protein 305