PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486320.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 610aa    MW: 68431.1 Da    PI: 6.0728
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-22129221190
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv++++L +gD++vF   ++s+f
  XP_016486320.1 129 FCKVLTASDTSTHGGFSVLRKHANEClpsldMNQQTPTQELIAKDLHGTEWHFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDSFVFL--RTSQF 221
                     99****************************9555555679***********************************************9..33555 PP
2Auxin_resp79.11.1e-262172792083
      Auxin_resp  20 stseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      ts+F++ ++k+++++k+ +svGmRfkm+fe+e+s+err++Gt+vg++dl++ +W++S WrsLk
  XP_016486320.1 217 RTSQFIIGLNKYLETVKHGYSVGMRFKMQFEGEESPERRFTGTIVGIEDLSS-QWKDSTWRSLK 279
                     58***********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-35117251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-36122220IPR015300DNA-binding pseudobarrel domain
CDDcd100174.86E-19127227No hitNo description
PfamPF023629.8E-21129220IPR003340B3 DNA binding domain
SMARTSM010198.8E-15129228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.068129229IPR003340B3 DNA binding domain
PfamPF065072.8E-23218279IPR010525Auxin response factor
PfamPF023092.0E-7497542IPR033389AUX/IAA domain
SuperFamilySSF542779.22E-12500582No hitNo description
PROSITE profilePS5174522.418506587IPR000270PB1 domain
PfamPF023092.0E-5552589IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MENNGCYQSQ QQTNFSAKGK DDLYHELWKL CAGPLVDVPK DGERVYYFPQ GHMEQLEASM  60
NQELNLRIPS FNLQPKILCR VIHTQLLAEQ DTDEVYAQIT LMPEAAEQAE PTSQDPCLPE  120
PQRPKVHSFC KVLTASDTST HGGFSVLRKH ANECLPSLDM NQQTPTQELI AKDLHGTEWH  180
FKHIFRGQPR RHLLTTGWST FVSSKRLVAG DSFVFLRTSQ FIIGLNKYLE TVKHGYSVGM  240
RFKMQFEGEE SPERRFTGTI VGIEDLSSQW KDSTWRSLKV QWDEPASISR PDRVSPWEIE  300
PFVASVPNPL VPPMAGKNKR HRPHIETKIS EPASSVASAV WNPSIDSPQF NTTGINSSTL  360
TSHTDSGCGW RLPHLNASSS MLVDETEDSK SASAWSGYPS VLSSQFSKGT NQPILSPTDE  420
RKCETITTCR LFGIDLKSTL ISTAEAPLPK PANISNVSTE RASPNTVPAG DSDQNSDLSI  480
DFKDQKQGQL QLLLKEVQSK QNCSTRSRTK VQMQGVAVGR AVDLTALKGY NELIKELEEM  540
FEIQGELHPR NKWEIVFTDD EGDMMLMGDH PWLEFCNVVR RIFIVSSQDI KKWSAGNKLL  600
SCADNEAIAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1292130217355Auxin response factor 1
4ldy_B1e-1292130217355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486320.10.0PREDICTED: auxin response factor 9-like isoform X3
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1S4BBL50.0A0A1S4BBL5_TOBAC; Auxin response factor
STRINGXP_009764747.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9