PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486336.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 683aa    MW: 75672.1 Da    PI: 7.1103
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.91.9e-32218274259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++++ei+Y+g Hnh+
  XP_016486336.1 218 DDGYTWRKYGQKHVKGSEFPRSYYKCTQQNCPVKKKVERSP-DGQITEIVYKGAHNHH 274
                     8****************************************.***************8 PP
2WRKY102.72e-32430488159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver+ ++   v++tYeg+Hnhe
  XP_016486336.1 430 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERAPDNLISVITTYEGKHNHE 488
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-27208275IPR003657WRKY domain
SuperFamilySSF1182901.44E-24213275IPR003657WRKY domain
SMARTSM007743.9E-36217275IPR003657WRKY domain
PROSITE profilePS5081122.814218276IPR003657WRKY domain
PfamPF031062.1E-25218274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-35415490IPR003657WRKY domain
SuperFamilySSF1182903.14E-28423490IPR003657WRKY domain
PROSITE profilePS5081136.472425490IPR003657WRKY domain
SMARTSM007745.5E-38430489IPR003657WRKY domain
PfamPF031061.4E-25431488IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MERNIGEPID DWNFQIVENL DSETMLDTHE SAVKVEERSG NAENGSLFPN NNNKRSSIAE  60
RRAAKCGFNA STISIAQFRV TTTSTPEMSP PTARPNFLTI PPGLTPAALL DSPVMLPNSL  120
APQSPTTGSF HFSTINQENT MKTTQIARDH FEFPVESPKA TALKKCSLDI AGETNVQQNM  180
SCIGLTNIHE SGNCARRANQ FEQRSAVTSY KITCNGSDDG YTWRKYGQKH VKGSEFPRSY  240
YKCTQQNCPV KKKVERSPDG QITEIVYKGA HNHHKSQPPR RATMSSTVYG LGETSEMSEG  300
NIGGSNSWRS VQFERNKDVR APSGLDRTSS ASVLTKVSDP LMLNYQKTNI NAFESAGTTP  360
EPSSTLASRD DEDEDRATEG STSLGDDVDD YAFDHKRRRR EFYSVETSLS SRTTREPRVV  420
VQIESEIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSAG CPVRKHVERA PDNLISVITT  480
YEGKHNHEVP STNKTNCAIS GNQALTSTSK THKVSNLGMQ VQDCNFQFNR KPFDYVRPSF  540
LDLRFGATSP IYDLKFPTNL HSYGSFLLSP TQVSNSCSFA PLQMPEFPLP LSLPMSLPLV  600
GPNIVPPLGG FHFNDLPLTP NGVSSHSSIA VGDQKYIHDD NNNNKNAIIV RGNEEIKNEN  660
LCDHQNGASS AVFCGQIMDN FPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32218491878Probable WRKY transcription factor 4
2lex_A2e-32218491878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR5596780.0KR559678.1 Nicotiana benthamiana WRKY transcription factor (WRKY79) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486336.10.0PREDICTED: probable WRKY transcription factor 33 isoform X1
TrEMBLA0A1S4BBY80.0A0A1S4BBY8_TOBAC; probable WRKY transcription factor 33 isoform X1
STRINGXP_009598832.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.13e-83WRKY DNA-binding protein 34