PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486371.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 445aa MW: 47818.8 Da PI: 6.1834

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486371.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.7e-05	283	305	33	55
.TTS-STCHHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksLq 55 ++s++ +Ka++L +++eY+k+Lq XP_016486371.1 283 NQSERTDKASMLDEVIEYLKQLQ 305 5899******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	0.00116	282	308	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.4E-6	283	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.11E-6	283	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MNQCVPSWEF EDTSTPPKLP LQTQSNSLAP GVPSLDYEVA ELTWENGQLA MHGLGPPRVP 60 NNKPISNYGG TLESIVNQGT RSIPHHHQKS ALNGSGHGCD EVVPWFNYNH VVADTPLVPG 120 LLTMAKDALV PCSANSNYHN RPPSSVQVPG LDGSTHVGSC STGATNSRDW MAVPRVRMEP 180 THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT SSDKQCTNRT 240 GDDHDSVCHS RSKREVGDEE DEKKGSKNSS SSTKRKRAAA IHNQSERTDK ASMLDEVIEY 300 LKQLQSQVNM MSRMNMSPAM MLPLAMQQQL QMSMMAAPMG MGMGMGMGMG MTGVAGVLDI 360 NTLSRPNITG LPPFLHPTAA AAAAFMQPMT SWDGSTDRLN AAAVPDPLAA LLACQSQPMT 420 MDAYSRMAAL YQQFLQSAAG SGPKN

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MNQCVPSWEF EDTSTPPKLP LQTQSNSLAP GVPSLDYEVA ELTWENGQLA MHGLGPPRVP  60
NNKPISNYGG TLESIVNQGT RSIPHHHQKS ALNGSGHGCD EVVPWFNYNH VVADTPLVPG  120
LLTMAKDALV PCSANSNYHN RPPSSVQVPG LDGSTHVGSC STGATNSRDW MAVPRVRMEP  180
THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT SSDKQCTNRT  240
GDDHDSVCHS RSKREVGDEE DEKKGSKNSS SSTKRKRAAA IHNQSERTDK ASMLDEVIEY  300
LKQLQSQVNM MSRMNMSPAM MLPLAMQQQL QMSMMAAPMG MGMGMGMGMG MTGVAGVLDI  360
NTLSRPNITG LPPFLHPTAA AAAAFMQPMT SWDGSTDRLN AAAVPDPLAA LLACQSQPMT  420
MDAYSRMAAL YQQFLQSAAG SGPKN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486371.1	0.0	PREDICTED: transcription factor UNE10-like isoform X2
TrEMBL	A0A1S4BC24	0.0	A0A1S4BC24_TOBAC; transcription factor UNE10-like isoform X2
STRING	XP_009792481.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	7e-61	bHLH family protein