PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486372.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 417aa    MW: 44985.9 Da    PI: 8.4817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486372.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.39e-16232277555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRd+iN+++ +L++++P++      K +Ka++L +++eY+k+Lq
  XP_016486372.1 232 HNQSERKRRDKINQRMKTLQKMVPNS-----SKTDKASMLDEVIEYLKQLQ 277
                     9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-19225294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.606227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-16232280No hitNo description
PfamPF000102.3E-13232277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-18232286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MHGLGPPRVP NNKPISNYGG TLESIVNQGT RSIPHHHQKS ALNGSGHGCD EVVPWFNYNH  60
VVADTPLVPG LLTMAKDALV PCSANSNYHN RPPSSVQVPG LDGSTHVGSC STGATNSRDW  120
MAVPRVRMEP THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT  180
SSDKQCTNRT GDDHDSVCHS RSKREVGDEE DEKKGSKNSS SSTKRKRAAA IHNQSERKRR  240
DKINQRMKTL QKMVPNSSKT DKASMLDEVI EYLKQLQSQV NMMSRMNMSP AMMLPLAMQQ  300
QLQMSMMAAP MGMGMGMGMG MGMTGVAGVL DINTLSRPNI TGLPPFLHPT AAAAAAFMQP  360
MTSWDGSTDR LNAAAVPDPL AALLACQSQP MTMDAYSRMA ALYQQFLQSA AGSGPKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224239RKRAAAIHNQSERKRR
2235240ERKRRD
3236241RKRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486372.10.0PREDICTED: transcription factor UNE10-like isoform X3
TrEMBLA0A1S4BBX50.0A0A1S4BBX5_TOBAC; transcription factor UNE10-like isoform X3
STRINGXP_009792481.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-64bHLH family protein