PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486393.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 347aa    MW: 37687.4 Da    PI: 8.3292
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702225.88.4e-701232773153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsstk 90 
                     +g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++       +++++  +++ +++ +s+l++++
  XP_016486393.1 123 VGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALNQQHNQQQqtqqlslRADSNIIPKRPRENPSSSLACSR 217
                     7899****************************************************998887777666666644444444444667999999999 PP

          DUF702  91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     l++++s+      ++P+evss+avfrcv+vs++dd+e+++aYqtav+igGh+fkGiLydqG+e
  XP_016486393.1 218 LPTTSSE---VGGHFPAEVSSQAVFRCVKVSAIDDAEDQFAYQTAVNIGGHLFKGILYDQGPE 277
                     9998766...5677***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.6E-68125277IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-26127169IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.7E-28228276IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSGFFTLGGG GGGGNKEQQQ QQEQDQLATN SLLLFKNEEI YNKGFELWQQ YYQLHQQRAQ  60
TPQHQVQEMD FSVGVGPSNN RRIISGSSSS GNNNIVGDDN NNHNYSNSFR VMRPTGGSSS  120
SGVGGMNCQD CGNQAKKDCP HLRCRTCCKS RGFQCQTHVK STWVPAAKRR ERQQQLAALN  180
QQHNQQQQTQ QLSLRADSNI IPKRPRENPS SSLACSRLPT TSSEVGGHFP AEVSSQAVFR  240
CVKVSAIDDA EDQFAYQTAV NIGGHLFKGI LYDQGPEGRY SGGGESSSGS GAAQQALNFI  300
TGATTSTTAA AATSHQQQHG TMFDPSVYPT PINAFMAGTQ FFPPPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064345e-45AC006434.5 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence.
GenBankAC0237545e-45AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence.
GenBankAY8006205e-45AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBankAY9247305e-45AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
GenBankCP0026845e-45CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486393.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X2
TrEMBLA0A1S4BC440.0A0A1S4BC44_TOBAC; protein SHI RELATED SEQUENCE 1-like isoform X2
STRINGXP_009599252.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-65Lateral root primordium (LRP) protein-related