PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486619.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 200aa MW: 22631.2 Da PI: 4.4113

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486619.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.2	1.1e-30	25	83	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s+ gC++kk+vers++d ++++itY+++Hnh+ XP_016486619.1 25 SDCWSWRKYGQKPIKGSPYPRGYYKCSSSkGCSAKKQVERSSTDSSLFIITYTSTHNHP 83 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-31	15	85	IPR003657	WRKY domain
SuperFamily	SSF118290	6.02E-26	21	85	IPR003657	WRKY domain
SMART	SM00774	5.4E-35	24	84	IPR003657	WRKY domain
PROSITE profile	PS50811	31.066	25	85	IPR003657	WRKY domain
Pfam	PF03106	1.8E-25	26	83	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MTQKVVITVQ MEANAIKQKN EGPPSDCWSW RKYGQKPIKG SPYPRGYYKC SSSKGCSAKK 60 QVERSSTDSS LFIITYTSTH NHPGPNLPYK DSPLNPVTQD SPMTLQQDQE PITDRHVSLE 120 DNDGILVQQE ENQFTDKLLG TISYDDFLPL SYPQLMNFPK SELSEENDFY DELGELQLPP 180 SFTSFAGIFE ETILVDPSYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-21	26	85	18	79	Disease resistance protein RRS1
5w3x_D	2e-21	26	85	18	79	Disease resistance protein RRS1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-65	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772110.1	1e-148	PREDICTED: probable WRKY transcription factor 65
Refseq	XP_016486611.1	1e-148	PREDICTED: probable WRKY transcription factor 65 isoform X1
TrEMBL	A0A1S4BCR7	1e-146	A0A1S4BCR7_TOBAC; probable WRKY transcription factor 65 isoform X1
TrEMBL	A0A1U7WD10	1e-146	A0A1U7WD10_NICSY; probable WRKY transcription factor 65
STRING	XP_009772110.1	1e-147	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	4e-21	WRKY DNA-binding protein 35