PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486752.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 130aa MW: 15894.5 Da PI: 10.4448

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486752.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	70.5	3.5e-22	1	54	40	102
THHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 40 vLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 +LpkyFkh+nf+SFvRQLn+YgFkkv +++ weF+h++Fkkg ++lle+i rkk XP_016486752.1 1 MLPKYFKHNNFSSFVRQLNTYGFKKVASKR---------WEFQHDKFKKGCRQLLEEITRKKC 54 59***********************999.........*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00056	1.5E-10	1	13	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.2E-19	1	52	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.8E-18	1	52	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SMART	SM00415	7.3E-9	1	52	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	2	26	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.07E-16	2	52	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.5E-10	14	26	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MLPKYFKHNN FSSFVRQLNT YGFKKVASKR WEFQHDKFKK GCRQLLEEIT RKKCEPSAFP 60 IYLKPTERNT FAIKEENTTR QLLMEENKNL RKERLELQMQ IAHFQKLEMK LLECLSQYVE 120 NSQNKIRRLF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486752.1	3e-91	PREDICTED: heat stress transcription factor B-2a-like
TrEMBL	A0A1S4BD12	7e-90	A0A1S4BD12_TOBAC; heat stress transcription factor B-2a-like
STRING	XP_009772330.1	6e-89	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10707	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	8e-24	heat shock transcription factor B2A