PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487145.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 446aa    MW: 49253 Da    PI: 7.1079
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.9e-31103160260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  XP_016487145.1 103 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 160
                     8****************************************.***************85 PP
2WRKY106.71.2e-33267325159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_016487145.1 267 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 325
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-2693161IPR003657WRKY domain
PROSITE profilePS5081122.43597161IPR003657WRKY domain
SuperFamilySSF1182901.57E-2499161IPR003657WRKY domain
SMARTSM007743.4E-33102160IPR003657WRKY domain
PfamPF031066.2E-24103159IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.6E-38252327IPR003657WRKY domain
SuperFamilySSF1182901.44E-29259327IPR003657WRKY domain
PROSITE profilePS5081138.825262327IPR003657WRKY domain
SMARTSM007743.1E-39267326IPR003657WRKY domain
PfamPF031062.4E-26268325IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
HTSLIKISTG LNQQQNEPLK EVQDQSHPQL VATSSLAKHE MASSKELSLS APINVDDSSK  60
EESLSAPINV DAMNMRGQSN TSMQVSLADH KDVSSVTAER SSDDGYNWRK YGQKLVKGSE  120
FPRSYYKCTY PNCEVKKIFE RSPEGQITEI VYKGSHDHPK PQLSRRFTPG ALMSIQEDKF  180
FVEDKFNANA QTSKIEPIST PVSPQQVDAD GPEGAVSQMQ GTNDDMDEDD PFVKRRKMDG  240
AVDITPVIKP IREPRVVVQT VSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTNAGCPV  300
RKHVERASHD PKAVITTYEG KHNHDVPAAR SNNHEMAGST LATGGSRIRA EETYSINLDL  360
GVGIGYGVEN GNNRQLHTVH NQVQVSRSGM MVVQPAAIAA HYGIVNGGMS RFGPIDNHVQ  420
GHGFETLPLQ PSTQFPQNYG KILLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-38103328878Probable WRKY transcription factor 4
2lex_A3e-38103328878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111290.0AB711129.1 Solanum tuberosum StWRKY17 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487145.10.0PREDICTED: probable WRKY transcription factor 20, partial
SwissprotQ93WV01e-120WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1S4BDY90.0A0A1S4BDY9_TOBAC; probable WRKY transcription factor 20
STRINGXP_009804327.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-122WRKY family protein