PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487440.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 448aa    MW: 49581.9 Da    PI: 7.7383
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-18312411198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   +++  +  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v F++++  +++
  XP_016487440.1 312 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSDGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVAFSRID-PGGK 404
                     99**************************556666778***************9989999999***9.********************887.7887 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_016487440.1 405 LVMGFRK 411
                     8888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-21309412IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-29309415IPR015300DNA-binding pseudobarrel domain
CDDcd100174.44E-24310411No hitNo description
SMARTSM010193.7E-21312412IPR003340B3 DNA binding domain
PfamPF023625.9E-16312411IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096312413IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGSMICMNEV CRKTTSSEWR KGWSLKSGGF ANLCYNCGSA FENLTFCETF HMGDSGWREC  60
KKCGKHLHCG CIASKYLFEY LDFGGVGCIS CTRRFDGHSM RPMQPLHVEK GVDETNFEEG  120
RLPTVNNITE ISEPGQPFQS QKDENNVSLG KTKQEKLLPV GDVSTCFSNL NQQSIASLFR  180
EQDNSKPNQG VKEMYDTTNQ PSLDFSLSTP VGCSSPGLSF PGGGVEGREH EKTPPFQQGL  240
RMRHILLKPP KPSPSFGSDS NKELPSQTRI ARPPAEGRGG RNQLLPRYWP RITDQELRQL  300
SGDLKSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP INQSDGLPIR IQDIKGKEWT  360
FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA GDTVAFSRID PGGKLVMGFR KATNSVETQD  420
PQSSYLPDGS GSADTSFTGL TENLNVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-712904192131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487440.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X2
SwissprotQ6Z3U31e-136Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1S4BET40.0A0A1S4BET4_TOBAC; B3 domain-containing protein Os07g0679700-like isoform X2
STRINGXP_009771757.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-121high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]