PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016487673.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 197aa MW: 22860.3 Da PI: 9.7319

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016487673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.3e-19	3	63	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql +L++l++k r+p+ ++ ++++++l +++ ++V++WFqN++a++++ XP_016487673.1 3 RPRWSPTPQQLMILQDLYRKgLRNPTSSQVQKITAHLslfgKIQCKNVFYWFQNHKARDRQ 63 89***************99***********************************996 PP
2	Wus_type_Homeobox	107	1.1e-34	2	64	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+Ptp+Q++iL++ly++Glr+P+++++q+ita+L+ +Gki+ kNVfyWFQN+kaR+rqk XP_016487673.1 2 PRPRWSPTPQQLMILQDLYRKGLRNPTSSQVQKITAHLSLFGKIQCKNVFYWFQNHKARDRQK 64 579***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.819	1	64	IPR001356	Homeobox domain
SMART	SM00389	1.7E-7	1	68	IPR001356	Homeobox domain
CDD	cd00086	3.02E-6	2	64	No hit	No description
SuperFamily	SSF46689	8.98E-11	3	64	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.0E-8	3	63	IPR009057	Homeodomain-like
Pfam	PF00046	1.2E-16	3	63	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MPRPRWSPTP QQLMILQDLY RKGLRNPTSS QVQKITAHLS LFGKIQCKNV FYWFQNHKAR 60 DRQKLRKQLL HQMEKTPTED NDNQLPLLIN NTNTNDVVHF VENYPSFPPN VHTFYPHSPT 120 ILLHQTEGKE TSSAQMMNNV GKVDLRLTEN DMMKMNVQGW VLMMTDNMGQ NSIPCCSNVR 180 PIETLQLFPV KATGVKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	6e-65	HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBank	HG975523	6e-65	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016487673.1	1e-147	PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBL	A0A1S4BFQ5	1e-145	A0A1S4BFQ5_TOBAC; WUSCHEL-related homeobox 3-like
STRING	XP_009626933.1	1e-145	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2959	19	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	2e-31	WOX family protein