PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488501.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 251aa    MW: 27339 Da    PI: 7.8964
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR24.17.2e-081261642
             TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42
                    +YCeCfa+g +C+  C+C +C+N+ e+
  XP_016488501.1  1 MYCECFASGIYCDG-CNCANCHNNVEN 26
                    6*************.********9875 PP
2TCR52.59.5e-1771110140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_016488501.1  71 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 110
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036382.9E-5123IPR005172CRC domain
PROSITE profilePS5163432.8821111IPR005172CRC domain
SMARTSM011140.0061126IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011148.4E-2071112IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.6E-1374109IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MYCECFASGI YCDGCNCANC HNNVENEPAR REAVEATLER NPHAFRPKIA SSPHGVRENR  60
EEAGDGLVLP KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCMDCKNFE GSQERQALFH  120
GDHANNMAYL QQAANAAITG AIGSSGYGSP PVNKKRKAHE LFFGSMIKDP VYRLGQLQQE  180
SQIKASVSPS SLSSIPGPRF GNAAALGPSK FTYRSLLADL IHPHDIKELC SVLVDYAWEA  240
GKMLAGNHGG I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-27112024132Protein lin-54 homolog
5fd3_B2e-27112024132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488500.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_016488501.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD11e-116TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1S4BHZ20.0A0A1S4BHZ2_TOBAC; protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A1S4BI140.0A0A1S4BI14_TOBAC; protein tesmin/TSO1-like CXC 5 isoform X2
STRINGXP_009766310.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-117Tesmin/TSO1-like CXC domain-containing protein