PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488592.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 695aa    MW: 77231 Da    PI: 8.0913
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488592.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07586635147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
   XP_016488592.1 586 RRPFSVAEVEALVEAVEQLGTGRWRDVKMRAFdnaDHRTYVDLKDKWKTL 635
                      6789999*******************97666689*9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542367.95E-8388471IPR029071Ubiquitin-related domain
PROSITE profilePS5005310.157392462IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.904.2E-4395462No hitNo description
PROSITE profilePS5129416.721581640IPR017930Myb domain
SMARTSM007179.1E-8585638IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-10586636IPR009057Homeodomain-like
SuperFamilySSF466893.51E-15587668IPR009057Homeodomain-like
CDDcd116604.58E-17587637No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MVSKKRLNCG FSGYQIPVIP KAPRSARKRR PCNKLDDDQI CAFELLAAVA GKLLLESESS  60
ASSNAGAPAG KYELADCRDS IKHEQVEDDK AVRSECLDQG SCVESAYIPE AAEQEQAFKN  120
GLSKPFAENK FFLEHTSTII GSNSLLKDWS DVKLESCKEV SADAQLQTKV EGGSPDLADP  180
FDIRIVEGTR KQLDDDSKQT ELTVANTCSI KAPIEKNVNS SALVNSDSSV QFPLYRDPVP  240
CASFVKSRNN VKLGIRDDDE NYFGCYRHST KIRTFRPTSR ITYRRIRKML TSRHWKVAPK  300
LKDCERSYSN DGVKSFYCNR KNKRGNERCR FEIPSKRRKL YDHGFAVAYD KEASSESISN  360
SHEKGIKGDT AIPPKGAGAS ASVINHQKDP NVKFSIKSFK VPELYIEVPE TETIGSLKRT  420
VMEAVTAILG SGLRVGVVLQ GKKVRDDNRT LQQVGISPND NLDTLGFTLE PSFSKVPLSL  480
SPKDDTLASA SYITDQELSR HPSSPIFELG PPNALSDPPE AKLDKHDESN HELEMSPATP  540
IDQSADEAFP DFKALAIVPP VNTEALAVVP VNHKNRCSEL SQRRTRRPFS VAEVEALVEA  600
VEQLGTGRWR DVKMRAFDNA DHRTYVDLKD KWKTLVHTAS IAPQQRRGEP VPQEHLDRVL  660
AAHSYWSQHQ AKQHAKQYAE PLKIVDAQVQ NGVAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-645706911118Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488592.10.0PREDICTED: telomere repeat-binding protein 4-like
TrEMBLA0A1S4BIC80.0A0A1S4BIC8_TOBAC; telomere repeat-binding protein 4-like
STRINGXP_009620521.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-102TRF-like 2