PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016488598.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 253aa MW: 29284.7 Da PI: 8.1128

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016488598.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	244.9	3.2e-75	2	250	127	373
GRAS 127 aLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219 L+q L++ p+gpp+lRiTg++ p++g +e+le+tg+rLak++e+++vpfe+n+++++++e++++e+L++ +gE++aVn+ ++l++llde+v XP_016488598.1 2 ILIQLLSQIPGGPPKLRITGIDLPQPGfrPAESLEQTGSRLAKYCERFHVPFEYNAIATQNWENIKIEDLKLASGETVAVNCLFRLKNLLDETVV 96 69**********************9**************************999******************************* PP GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314 ++s+rd+vL+l+++++P+++v + + +++++ F++rf eal +ys+lfd+++a+lpr++++r E+e+ +re++nv+aceg+er+er et+++ XP_016488598.1 97 VDSPRDAVLSLIRKMNPDIFVQAVVNGSYSAPFFVTRFREALFHYSTLFDMFDATLPRDDQQRLHFEQEFYRREAMNVIACEGSERVERPETYKQ 191 ******************************************************************************************* PP GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 W+ r ++aGFk +pl+++ +++ ++ ++ + + + +e+ +++++gWk+r + + S+W XP_016488598.1 192 WQVRYMRAGFKLLPLNQQLMQKLRCKVKGGYHRDFVFDEDGNWMLQGWKGRVVCASSCW 250 ***************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.479	1	231	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-72	2	250	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
PILIQLLSQI PGGPPKLRIT GIDLPQPGFR PAESLEQTGS RLAKYCERFH VPFEYNAIAT 60 QNWENIKIED LKLASGETVA VNCLFRLKNL LDETVVVDSP RDAVLSLIRK MNPDIFVQAV 120 VNGSYSAPFF VTRFREALFH YSTLFDMFDA TLPRDDQQRL HFEQEFYRRE AMNVIACEGS 180 ERVERPETYK QWQVRYMRAG FKLLPLNQQL MQKLRCKVKG GYHRDFVFDE DGNWMLQGWK 240 GRVVCASSCW VPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-23	1	252	144	380	Protein SCARECROW
5b3h_A	5e-23	1	252	143	379	Protein SCARECROW
5b3h_D	5e-23	1	252	143	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764837.1	0.0	PREDICTED: scarecrow-like protein 14
Refseq	XP_016488598.1	0.0	PREDICTED: scarecrow-like protein 14, partial
Swissprot	Q9XE58	1e-122	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S4BI92	0.0	A0A1S4BI92_TOBAC; scarecrow-like protein 14
TrEMBL	A0A1U7V9X2	0.0	A0A1U7V9X2_NICSY; scarecrow-like protein 14
STRING	XP_009764837.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-124	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]