PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488604.1
Common NameAGP1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 343aa    MW: 37423 Da    PI: 6.2601
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.3e-18243276134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_016488604.1 243 CQHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 276
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.0E-733330IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.213237273IPR000679Zinc finger, GATA-type
SMARTSM004013.7E-17237287IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15241300No hitNo description
Gene3DG3DSA:3.30.50.105.7E-15241274IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.52E-16242299No hitNo description
PROSITE patternPS003440243268IPR000679Zinc finger, GATA-type
PfamPF003205.4E-16243276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGSNLVDEID CGSFFDHIDD LIEFPLENEG AGLSSTDCKD FPTIWNDPLP DSDSLFSGSH  60
RNSASDFSAE LSVPYEDIVQ LEWLSAFVED SFSGGGLTLG KDNFPLNKET SEAKFQTSSP  120
VSVLESSSSS SSSSCSVEKT VPLSSPCHRG PQRARSKRPR PATFNPAPAI QLISPTSSFT  180
EIPQPFVAPK ITSESENFAE SPMKKILKPA VAEQKTKKKL KLSFPSSLVK TNQNPVAQTI  240
RKCQHCEITK TPQWRAGPMG PKTLCNACGV RYKSGRLFPE YRPAASPTFV PAIHSNSHKK  300
VIEMRTKVVP DNNATIARTA PPATVTQPEF NPSNEDSVEE ENK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076890.0AB107689.1 Nicotiana tabacum AGP1 mRNA for AG-motif binding protein-1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312754.10.0GATA transcription factor 8-like
TrEMBLQ76DY30.0Q76DY3_TOBAC; GATA transcription factor
STRINGXP_009598426.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-40GATA family protein
Publications ? help Back to Top
  1. Sugimoto K,Takeda S,Hirochika H
    Transcriptional activation mediated by binding of a plant GATA-type zinc finger protein AGP1 to the AG-motif (AGATCCAA) of the wound-inducible Myb gene NtMyb2.
    Plant J., 2003. 36(4): p. 550-64
    [PMID:14617085]